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Report for CCDS3362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3362.1 Public Homo sapiens 4 TNIP2 24 110 108 CCDS HistoryNCBI Gene:79155Re-query CCDS DB by CCDS ID:3362.1Re-query CCDS DB by GeneID:79155See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3362.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315423.12 ENSP00000321203.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315423.12Link to Ensembl Protein Viewer:ENSP00000321203.7Re-query CCDS DB by Nucleotide ID:ENST00000315423Re-query CCDS DB by Protein ID:ENSP00000321203
Original member Current member NCBI NM_024309.4 NP_077285.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024309.4Link to Protein Sequence:NP_077285.3Re-query CCDS DB by Nucleotide ID:NM_024309Re-query CCDS DB by Protein ID:NP_077285Link to BLAST:NP_077285.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077285.3 429 Q8NFZ5-1 429 100% 0 0

Chromosomal Locations for CCDS 3362.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2742257 2742520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2744387 2744506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2744697 2744945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2745446 2745535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2747655 2747945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2756014 2756289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGTCCCGGGACCCGGGGTCGGGCGGCTGGGAGGAGGCCCCGCGCGCAGCTGCCGCGCTCTGCACCCTGT
ACCACGAGGCCGGACAGCGGCTGCGCCGCCTGCAGGACCAGCTCGCTGCCCGCGACGCCCTCATCGCTCG
CCTCCGCGCCCGCCTGGCCGCGCTGGAGGGGGACGCCGCGCCGTCCCTAGTGGACGCGCTGCTGGAGCAG
GTTGCGCGCTTCCGGGAGCAGCTGCGAAGGCAGGAGGGCGGCGCCGCCGAGGCCCAGATGCGCCAGGAAA
TTGAGAGGCTGACTGAGCGACTAGAAGAAAAAGAGAGGGAGATGCAGCAGCTGCTGAGCCAGCCCCAACA
CGAGCGAGAGAAGGAAGTCGTCCTGCTACGGAGGAGCATGGCAGAAGGGGAGCGCGCCCGGGCCGCCAGT
GACGTCCTGTGCCGCTCCTTGGCCAACGAGACCCATCAGCTGCGGAGGACGCTGACCGCCACCGCCCACA
TGTGTCAGCATCTGGCCAAGTGTCTGGATGAACGACAGCATGCACAAAGGAATGTGGGGGAGAGAAGTCC
TGACCAGTCGGAACACACAGATGGGCACACCTCTGTCCAGAGTGTTATTGAGAAGTTGCAGGAAGAAAAT
CGACTGTTAAAACAGAAGGTGACTCACGTTGAAGACCTCAATGCCAAGTGGCAGCGCTACAACGCCAGCA
GGGACGAATACGTGAGGGGGCTCCATGCGCAGCTCAGGGGGCTGCAGATCCCCCACGAGCCCGAGCTGAT
GAGGAAGGAGATCTCCCGGCTCAACAGACAGTTGGAAGAGAAAATAAATGACTGTGCCGAAGTGAAGCAG
GAGCTGGCGGCCTCCAGGACGGCCCGGGATGCTGCGTTGGAGCGGGTGCAGATGCTGGAACAGCAGATTC
TCGCTTACAAGGATGACTTCATGTCAGAAAGGGCCGATCGGGAACGGGCTCAAAGTAGGATTCAAGAACT
GGAGGAAAAGGTCGCCTCTTTGCTGCACCAGGTGTCCTGGAGACAGGATTCTCGAGAGCCAGACGCCGGC
CGGATTCACGCTGGGAGCAAAACTGCCAAGTATTTGGCCGCCGACGCATTAGAGCTTATGGTGCCTGGTG
GCTGGAGGCCTGGGACTGGGTCCCAGCAGCCAGAACCCCCTGCAGAGGGCGGGCATCCTGGCGCGGCCCA
GAGAGGCCAGGGGGACCTTCAGTGCCCTCACTGCCTGCAGTGCTTCAGTGACGAGCAAGGGGAAGAGCTC
CTCAGGCATGTGGCTGAGTGCTGCCAGTGA

Translation (429 aa):
MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAAPSLVDALLEQ
VARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHEREKEVVLLRRSMAEGERARAAS
DVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQRNVGERSPDQSEHTDGHTSVQSVIEKLQEEN
RLLKQKVTHVEDLNAKWQRYNASRDEYVRGLHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQ
ELAASRTARDAALERVQMLEQQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAG
RIHAGSKTAKYLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL
LRHVAECCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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