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Report for CCDS20740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20740.1 Public Mus musculus 7 Hspbp1 23 108 98 CCDS HistoryNCBI Gene:66245Re-query CCDS DB by CCDS ID:20740.1Re-query CCDS DB by GeneID:66245See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20740.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079970.5 ENSMUSP00000078886.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079970.5Link to Ensembl Protein Viewer:ENSMUSP00000078886.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079970Re-query CCDS DB by Protein ID:ENSMUSP00000078886
Original member Current member NCBI NM_001360629.1 NP_001347558.1 Accepted alive Link to Nucleotide Sequence:NM_001360629.1Link to Protein Sequence:NP_001347558.1Re-query CCDS DB by Nucleotide ID:NM_001360629Re-query CCDS DB by Protein ID:NP_001347558Link to BLAST:NP_001347558.1
Original member Current member NCBI NM_024172.4 NP_077134.1 Accepted alive Link to Nucleotide Sequence:NM_024172.4Link to Protein Sequence:NP_077134.1Re-query CCDS DB by Nucleotide ID:NM_024172Re-query CCDS DB by Protein ID:NP_077134Link to BLAST:NP_077134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347558.1 357 Q99P31 357 100% 0 0
NP_077134.1 357 Q99P31 357 100% 0 0

Chromosomal Locations for CCDS 20740.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4660771 4660845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4663381 4663492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4664520 4664616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4664703 4664858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4677707 4677931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4681844 4682048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4684272 4684475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGCAGACAAAGGCTCAGGGGGCAGTCGCCTCCCTCTTGCGTTGCCTCCGGCCTCTCAGGGTTGCTCGT
CAGGGGGCAGTGGTTCCTCGGCGGGGGGCTCAGGCAACCCCCGGCCTCCACGGAACCTCCAAGGCCTGCT
GCAGATGGCTATTACTGCGGGTTCTCAGGAGCCAGACCCCCCTCCAGAACCCATGAGCGAGGAGAGACGC
CAATGGCTGCAGGAAGCCATGTCGGCCGCCTTCCGGGGCCAGCGAGAGGAGGTGGAGCAGATGAAGAACT
GCCTCCGGGTCCTGTCCCAGGCCACACCCGCAATGGCTGGCGAAGCTGAGCTGGCCACTGACCAGCAGGA
GCGTGAAGGCGCACTAGAGCTGCTGGCAGACCTGTGCGAGAACATGGACAATGCAGCAGATTTCTGCCAG
CTGTCAGGCATGCATCTGCTGGTGGGTCGATACCTGGAGGCAGGGGCTGCAGGGCTGCGCTGGAGGGCAG
CACAACTCATCGGCACATGCAGTCAGAACGTTGCAGCCATCCAGGAGCAGGTGTTGGGCTTGGGTGCCCT
GCGCAAGCTACTTCGGCTGCTCGACCGGGACTCCTGCGACACGGTACGAGTCAAGGCTCTCTTCGCCATC
TCCTGTCTTGTCCGAGAGCAGGAGGCTGGGTTGCTGCAGTTCCTCCGCCTGGATGGATTCTCAGTGCTGA
TGCGGGCCATGCAGCAGCAAGTGCAGAAGCTCAAGGTCAAGTCAGCATTCCTGCTGCAGAACTTGCTGGT
GGGCCACCCTGAGCACAAAGGAACCCTTTGCTCCATGGGGATGGTCCAGCAGCTGGTGGCCCTTGTGAGG
ACAGAACACAGTCCTTTCCATGAGCATGTGCTTGGAGCCCTGTGCAGCCTTGTGACAGATTTCCCTCAGG
GTGTTCGTGAATGCCGGGAGCCTGAGCTGGGCCTGGAGGAACTGCTCCGCCACCGCTGCCAGCTGCTGCA
GCAGCGTGAGGAGTACCAGGAGGAGCTGGAGTTCTGTGAAAAGCTGTTACAGACCTGTTTCTCTAGCCCT
ACCGACGACAGCATGGATCGCTGA

Translation (357 aa):
MADKGSGGSRLPLALPPASQGCSSGGSGSSAGGSGNPRPPRNLQGLLQMAITAGSQEPDPPPEPMSEERR
QWLQEAMSAAFRGQREEVEQMKNCLRVLSQATPAMAGEAELATDQQEREGALELLADLCENMDNAADFCQ
LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDSCDTVRVKALFAI
SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR
TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQREEYQEELEFCEKLLQTCFSSP
TDDSMDR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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