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Report for CCDS20335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20335.1 Public Mus musculus 6 Eefsec 23 108 98 CCDS HistoryNCBI Gene:65967Re-query CCDS DB by CCDS ID:20335.1Re-query CCDS DB by GeneID:65967See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20335.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165242.3 ENSMUSP00000131207.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165242.3Link to Ensembl Protein Viewer:ENSMUSP00000131207.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165242Re-query CCDS DB by Protein ID:ENSMUSP00000131207
Original member NCBI NM_023060.3 NP_075547.1 Updated not alive Link to Nucleotide Sequence:NM_023060.3Link to Protein Sequence:NP_075547.1Re-query CCDS DB by Nucleotide ID:NM_023060Re-query CCDS DB by Protein ID:NP_075547
Current member NCBI NM_023060.4 NP_075547.1 Accepted alive Link to Nucleotide Sequence:NM_023060.4Link to Protein Sequence:NP_075547.1Re-query CCDS DB by Nucleotide ID:NM_023060Re-query CCDS DB by Protein ID:NP_075547Link to BLAST:NP_075547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075547.1 583 Q9JHW4 583 100% 0 0

Chromosomal Locations for CCDS 20335.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88258201 88258391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88281549 88281705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88297577 88298236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88355483 88355647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88358546 88358642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88376204 88376411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88446206 88446479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGGCCGGCCGGCGGGTAAATGTGAATGTGGGCGTGCTGGGTCACATCGACAGTGGCAAAACAGCGCTGG
CGCGCGCGCTGAGCACCACGGCCTCCACTGCTGCCTTCGACAAGCAGCCGCAGAGCCGCGAGCGCGGCAT
AACGCTCGACCTGGGCTTCTCCTGTTTTGTCGTGCCGCTGCCGGGGGCAGAACCCGGTTCTAGCGACACG
CTGCTGCAGGTCACACTGGTCGACTGCCCCGGGCACGCCTCCCTCATCCGGACCATCATTGGCGGTGCCC
AGATCATTGATTTGATGATGCTCGTGATTGATGTGACCAAGGGAATGCAGACACAGTCCGCAGAGTGCCT
TGTGATTGGCCAGATCGCCTGCCAGAAGCTGGTTGTGGTGCTGAACAAAATAGACCTGTTAGCAGAAGGG
AAGAGACAGGCAGCGATTGACAAAATGACCAAGAAAATGCAGAAGACTCTTGAGAACACCAAATTCCGGG
GTGCACCGATTATTCCCGTGGCAGCCAAACCTGGGGGACCAGAAGCCCCTGAAACTGAAGCTCCACAGGG
CATCTCAGAACTCATTGAGCTCCTGAAGTCCCAGATTTCCATCCCAACGAGAGACCCCTCTGGACCATTC
CTTATGTCTGTGGACCACTGCTTCTCCATCAAGGGTCAAGGCACCGTGATGACTGGGACTATCCTCTCAG
GCACTATCAGCCTTGGGGACAGTGTGGAGATCCCTGCCCTCAAGGTGGTGAAGAAAGTGAAGTCCATGCA
GATGTTCCATACACCCGTCACCTCTGCCATGCAGGGGGACCGACTGGGCATCTGTGTCACCCAGTTTGAC
CCCAAGCTGTTGGAGCGTGGGCTGGTATGTGCACCCGAGTCTCTGCACACTGTTCACGCAGCCCTCATCT
CTGTGGAGAAGATCCCTTACTTCCGAGGACCCCTGCAGACCAAGGCCAAGTTCCATATCACCGTTGGCCA
TGAGACAGTCATGGGTCGCACGCTGTTCTTCAGCCCTGCTCCTGACAGCTTTGACTTGGAGCCCGTGCTA
GATTCCTTCGACCTTTCCCGAGAGTACCTCTTCCAAGAGCAGTACCTGTGCAAGGATTCCATGCCCACAG
CCACAGAAGGTGATGACGAGGCGGACCCCAAAGCCGGCCACGCCCCAGGGGGCCACTGCCCCCGGCAGCA
GTGGGCCCTGGTAGAGTTTGAGAAGCCAGTCACCTGCCCCCGACTCTGCTTGGTGATTGGCTCCAGACTA
GATGCCGACATTCACACCAACACATGCCGGCTGGCCTTCCATGGTGTCTTGCTGCAAGGGCTGGAGGACA
AGAACTACATTGAGAGCTTCCTGCCAGCACTGAGGGTTTACAAGCTGAAGCACAAGCATGGCCTTGTGGA
GCGGGTAATGGATGACTACAGCGTGATTGGACGTTCCCTGTTCAAAAAGGAGACCAACATCCAGCTCTTT
GTGGGGCTTAAGGTGCAGCTGTCCACAGGGGAACAGGGTATCATCGACAGTGCCTTCGGCCAAAGTGGCA
AGTTCAAGATCCACATCCCTGGTGGCCTCAGCCCTGAGTCCAAGAAGATCCTGACACCTACACTCAAGAA
GCGGAGCCGAGCCGGCCGTGGAGAGACCACCAAGCCAGAGGAGGGCACTGAACGGCCAGAGCCCATCCAG
CCTGTGACACTCAACCTGTCTTTCAAGCGCTATGTCTTTGACACCCAGAAGCGCATGGTACAGACTCCCT
GA

Translation (583 aa):
MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFVVPLPGAEPGSSDT
LLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLAEG
KRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAPQGISELIELLKSQISIPTRDPSGPF
LMSVDHCFSIKGQGTVMTGTILSGTISLGDSVEIPALKVVKKVKSMQMFHTPVTSAMQGDRLGICVTQFD
PKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRTLFFSPAPDSFDLEPVL
DSFDLSREYLFQEQYLCKDSMPTATEGDDEADPKAGHAPGGHCPRQQWALVEFEKPVTCPRLCLVIGSRL
DADIHTNTCRLAFHGVLLQGLEDKNYIESFLPALRVYKLKHKHGLVERVMDDYSVIGRSLFKKETNIQLF
VGLKVQLSTGEQGIIDSAFGQSGKFKIHIPGGLSPESKKILTPTLKKRSRAGRGETTKPEEGTERPEPIQ
PVTLNLSFKRYVFDTQKRMVQTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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