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Report for CCDS16840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16840.1 Public Mus musculus 2 Nxt1 23 108 98 CCDS HistoryNCBI Gene:56488Re-query CCDS DB by CCDS ID:16840.1Re-query CCDS DB by GeneID:56488See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047177.3 ENSMUSP00000038329.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047177.3Link to Ensembl Protein Viewer:ENSMUSP00000038329.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047177Re-query CCDS DB by Protein ID:ENSMUSP00000038329
Original member Current member EBI ENSMUST00000109961.7 ENSMUSP00000105587.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109961.7Link to Ensembl Protein Viewer:ENSMUSP00000105587.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109961Re-query CCDS DB by Protein ID:ENSMUSP00000105587
Original member Current member NCBI NM_001110159.1 NP_001103629.1 Accepted alive Link to Nucleotide Sequence:NM_001110159.1Link to Protein Sequence:NP_001103629.1Re-query CCDS DB by Nucleotide ID:NM_001110159Re-query CCDS DB by Protein ID:NP_001103629Link to BLAST:NP_001103629.1
Original member Current member NCBI NM_019761.6 NP_062735.4 Accepted alive Link to Nucleotide Sequence:NM_019761.6Link to Protein Sequence:NP_062735.4Re-query CCDS DB by Nucleotide ID:NM_019761Re-query CCDS DB by Protein ID:NP_062735Link to BLAST:NP_062735.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103629.1 140 Q9QZV9 140 100% 0 0
NP_062735.4 140 Q9QZV9 140 100% 0 0

Chromosomal Locations for CCDS 16840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 148675341 148675763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGCATCAGTAGATTTCAAGACCTATGTGGACCAGGCCTGCAGAGCTGCAGAGGAATTTGTCAATGTCT
ATTACACGACTATGGATAAGCGGCGTCGGCTGCTGTCCCGCCTGTACATGGGCACAGCCACTTTAGTATG
GAATGGAAATGCTGTTTCAGGACAAGAATCCTTGAGTGAGTTTTTTGAGATGTTGCCTTCCAGTGAGTTC
CAAATCAGCGTGGTAGACTGCCAGCCTGTCCATGATGACGCTACACCAAGCCAGACCACCGTGCTTGTGG
TCATCTGTGGAACAGTGAAGTTTGAAGGCAACAAACAGCGGGACTTCAACCAGAACTTCATCTTGACTGC
TCAGGCGTCACCCAGTAACACGGTGTGGAAGATAGCAAGTGACTGCTTCCGGTTCCAGGACTGGGCCAGC
TAG

Translation (140 aa):
MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEF
QISVVDCQPVHDDATPSQTTVLVVICGTVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDWAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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