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Report for CCDS39884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39884.1 Public Mus musculus 7 Nphs1 23 108 98 CCDS HistoryNCBI Gene:54631Re-query CCDS DB by CCDS ID:39884.1Re-query CCDS DB by GeneID:54631See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006825.8 ENSMUSP00000006825.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006825.8Link to Ensembl Protein Viewer:ENSMUSP00000006825.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000006825Re-query CCDS DB by Protein ID:ENSMUSP00000006825
Original member Current member NCBI NM_019459.2 NP_062332.2 Accepted alive Link to Nucleotide Sequence:NM_019459.2Link to Protein Sequence:NP_062332.2Re-query CCDS DB by Nucleotide ID:NM_019459Re-query CCDS DB by Protein ID:NP_062332Link to BLAST:NP_062332.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062332.2 1256 Q9QZS7-1 1256 100% 0 0

Chromosomal Locations for CCDS 39884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30460144 30460243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30460324 30460539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30460614 30460736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30460904 30461032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30461516 30461597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30461974 30462077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30462602 30462729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30462815 30462986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30463152 30463309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30463512 30463656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30463778 30463902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30465466 30465652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30465752 30465881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30466009 30466181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30467220 30467360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30467441 30467581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30467903 30468024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30470590 30470761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30470848 30471004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30471092 30471243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30474277 30474388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30474471 30474652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30477859 30477915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30481381 30481500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30481642 30481666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30481741 30481816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30481977 30482070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30482465 30482580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30486585 30486716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3771 nt):
ATGGGAGCTAAGGAAGCCACAGTCAGAGGCCCCGGGGCAAGCCCAGTGCACAGAACTTGCCACCTGATTC
CCCTGCTGCTCGCGGGAATGCTGACCACAGGCCTGGCCCAGTCGCCAGTCCCCACCTCAGCACCTCGAGG
CTTCTGGGCTCTATCTGAAAACCTGACTGTGGTGGAAGGGTCGACAGTTAAGCTGTGGTGTGGCGTCAGG
GCCCCCGGCAGTGTGGTGCAGTGGGCTAAGGATGGGCTGCTTCTGGGTCCAAACCCTAAGATTCCAGGCT
TCCCAAGGTACAGCCTGGAAGGAGACAGTGCTAAAGGTGAGTTCCACCTGCTTATTGAAGCCTGTGACCT
CAGCGATGATGCGGAGTACGAGTGCCAAGTCGGCCGCTCCGAGTTGGGTCCCGAGCTCGTGTCTCCCAGC
GTAATCCTCTCCATCCTAGTTTCCCCCAAGGTGCTTCAGTTAACCCCTGAGGCAGGAAGCACAGTTACCT
GGGTAGCTGGACAGGAATATGTGGTCACCTGTGTGTCTGGGGATGCAAAGCCAGCACCTGACATCATCTT
CATCCAGGGTGGACGCACGGTAGAGGATGTCTCCTCCAGCGTGAATGAGGGATCAGAGGAGAAACTCTTC
TTCACGGAAGCCGAAGCCAGGGTGACACCCCAGAGCTCAGATAATGGGCAGCTGCTAGTCTGCGAGGGGT
CCAACCCAGCCTTGGCCACTCCCATAAAGGCTTCGTTCACCATGAATATCCTGTTCCCCCCAGGACCTCC
TGTCATTGATTGGCCAGGCCTGAATGAGGGGCATGTACGGGCAGGGGAGAACCTGGAGCTACCCTGCATA
GCCAGAGGTGGAAATCCACCTGCGACCCTGCAGTGGCTGAAGAATGGTAAACCAGTGTCCATAGCTTGGG
GCACAGAGCATGCCCAGGCAGTGGCTCACAGTGTGCTGGTGATGACCGTTCGACCTGAAGACCACGGAGC
TCGGCTCAGCTGTCAGTCCTACAACAGTGTGTCTGCAGAGACCCAGGAGCGAAGCATCACTCTGCAGGTC
ACCTTTCCCCCCAGTGCCGTTACCATCCTGGGATCTACATCACAGTCTGAGAACAAAAATGTGACCCTTT
GCTGCCTTACCAAGTCCAGTCGCCCACGGGTCCTGCTGCGATGGTGGTTGGGTGGACGGCAGTTGCTGCC
CACGGATGAGACAGTCATGGATGGCCTGCATGGTGGCCACATCTCCATGTCCAATCTGACACTCTTGGTG
AAGAGAGAAGACAATGGCCTGTCCCTCACCTGCGAAGCCTTCAGTGATGCCTTCAGCAAGGAGACCTTCA
AGAAGTCACTCACCTTGAATGTAAAATACCCGGCCCAGAAGCTGTGGATTGAGGGACCCCCAGAGGGGCA
GAGCATCCGGACTGGAACTCGGGTGAGGCTGGTATGCTTGGCCATTGGAGGCAACCCAGAGCCCTCCCTC
ACCTGGCTTAAGGATTCGCGCCCGGTGAACGATCCTCGGCAGTCTCAGGAGCCCCGGCGTGTGCAGCTGG
GCAGTGTGGAGAAGTCCGGCAGCACTTTCTCCCGCGAGCTGGTGCTGATCATAGGCCCGCCGGACAACCT
AGCCAAGTTCTCCTGCAAGGCGGGTCAGCTCAGTGCGTCTACGCAGCTGGTGGTGCAGTTCCCCCCAACA
AACCTGACCATCCTGGCCAACTCGTCCGCACTGCGCCCAGGCGACGCCTTGAACTTGACCTGCGTCAGCA
TCAGCAGCAACCCTCCAGTTAACTTGTCTTTGGACAAGGAAGGAGAGAGGCTGGACGACGTGGCTGCAAA
ACCCCAGAGCGCCCCATTCAAAGGCTCCGCTGCATCCAGGAGTGTTTTTCTTCGGGTGTCATCCCGAGAC
CACGGTCACCGGGTTACCTGCCGGGCCCACAGCGAGGCACTTCGTGAAACCGTGAGCTCTTTCTACCGCC
TCAACGTGTTATACCCTCCAGAGTTCCTGGGAGAGCAAGTGCGGGCAGTGACCGTGGTGGAGCAGGGCCA
GGCACTGCTGCCTGTGTCCGTGTCTGCTAACCCCGCCCCCGAGGCCTTCAACTGGACCTTCCGAGGCTAC
CGCCTCAGCCCAGCTGGGGGTCCCCGGCACCGCATCCTGTCTGGAGGGGCACTGCAGCTGTGGAATGTAA
CCCGAGCTGACGATGGCTTTTATCAGCTACACTGCCAGAACTCGGAGGGCACCGCCGAGGCGCTGTTGAA
GCTGGACGTGCATTATGCTCCCACCATCCGTGCCCTGAAGGACCCTACTGAGGTGAATGTTGGGGGTTCT
GTGGATATAGTCTGCACCGTCGATGCCAATCCCATCCTCCCAGAGATGTTCAGCTGGGAGAGACTGGGGG
AAGACGAGGAGGAACTGAACCTGGACGACATGGAGAAGATGTCAAAGGGATCCACAGGGCGTCTGCGGAT
TCGCCAGGCCAAGCTGTCCCAGGCTGGCGCTTACCAGTGCATCGTGGACAACGGGGTGGCTCCCGCAGCC
AGAGGACTGGTTCGTCTTGTTGTCCGATTTGCCCCCCAGGTGGATCATCCTACTCCCCTGACGAAAGTGG
CTGCTGCTGGGGACAGCACCAGCTCAGCCACACTCCACTGCCGTGCCCGGGGGGTCCCCAACATCGACTT
CACTTGGACCAAAAATGGGGTCCCTCTGGATCTCCAAGACCCCAGGTACACAGAGCACAAGTACCACCAG
GGTGTGGTCCACAGCAGCCTCCTGACCATTGCTAATGTGTCTGCAGCCCAGGACTATGCCCTCTTCAAAT
GCACAGCCACCAATGCCCTTGGTTCAGACCACACCAACATCCAGCTCGTCAGCATCAGCCGTCCTGACCC
TCCACTGGGGCTGAAGGTTGTGAGCGTGAGCCCTCACTCGGTAGGACTGGAGTGGAAACCTGGCTTTGAT
GGGGGTCTGCCTCAGAGGTTCCAAATCAGGTATGAGGCCCTCGAGAGCCCAGGATTCCTCTACATGGATG
TCCTGCCTGCACAGGCCACCACCTTCACACTGACTGGGCTGAAGCCTTCTACACGGTACAGGATCTGGCT
GTTGGCCAGCAATGCCCTGGGGGACAGTGGATTGACGGACAAGGGGATCCAGGTCTCCATCACTACCCCA
GGCCTGGACCAGGCTCCTGAAGACACAGACCAGCCGCTGCCCACAGAGCAGCCTCCGGGACCCCCGAGGC
TGCCCCTGCTGCCTGTGCTCTTTGCGGTTGGTGGTCTTCTGTTGCTTTCCAATGCCTCCTGTGTTGGGGG
ACTCCTCTGGCGGAGAAGACTGAGGCGCCTTGCTGAGGAGATCTCAGAGAAGACAGAGGCAGGGTCGGAG
GAGGATCGAATCAGGAATGAATATGAGGAGAGTCAGTGGACTGGGGACCGGGACACAAGAAGCTCCACGG
TTAGCACAGCAGAAGTGGACCCACACTACTACTCCATGAGGGACTTCAGTCCCCAGCTTCCCCCAACACT
GGAAGAGGTGTCATATCGCCAAGCCTTCACAGGTATTGAAGATGAGGACATGGCCTTCCCCGGACACCTG
TATGACGAGGTGGAGAGAGTCTATGGCCCACCTGGGGTCTGGGGACCCCTCTATGATGAAGTACAAATGG
ACCCCTATGACCTTCGCTGGCCTGAGGTCAAATATGAGGACCCAAGGGGAATCTACGACCAGGTGGCGGC
AGACATGGATGCTGGGGAGCCTGGTTCTCTGCCCTTTGAGCTGAGGGGACATCTGGTGTGA

Translation (1256 aa):
MGAKEATVRGPGASPVHRTCHLIPLLLAGMLTTGLAQSPVPTSAPRGFWALSENLTVVEGSTVKLWCGVR
APGSVVQWAKDGLLLGPNPKIPGFPRYSLEGDSAKGEFHLLIEACDLSDDAEYECQVGRSELGPELVSPS
VILSILVSPKVLQLTPEAGSTVTWVAGQEYVVTCVSGDAKPAPDIIFIQGGRTVEDVSSSVNEGSEEKLF
FTEAEARVTPQSSDNGQLLVCEGSNPALATPIKASFTMNILFPPGPPVIDWPGLNEGHVRAGENLELPCI
ARGGNPPATLQWLKNGKPVSIAWGTEHAQAVAHSVLVMTVRPEDHGARLSCQSYNSVSAETQERSITLQV
TFPPSAVTILGSTSQSENKNVTLCCLTKSSRPRVLLRWWLGGRQLLPTDETVMDGLHGGHISMSNLTLLV
KREDNGLSLTCEAFSDAFSKETFKKSLTLNVKYPAQKLWIEGPPEGQSIRTGTRVRLVCLAIGGNPEPSL
TWLKDSRPVNDPRQSQEPRRVQLGSVEKSGSTFSRELVLIIGPPDNLAKFSCKAGQLSASTQLVVQFPPT
NLTILANSSALRPGDALNLTCVSISSNPPVNLSLDKEGERLDDVAAKPQSAPFKGSAASRSVFLRVSSRD
HGHRVTCRAHSEALRETVSSFYRLNVLYPPEFLGEQVRAVTVVEQGQALLPVSVSANPAPEAFNWTFRGY
RLSPAGGPRHRILSGGALQLWNVTRADDGFYQLHCQNSEGTAEALLKLDVHYAPTIRALKDPTEVNVGGS
VDIVCTVDANPILPEMFSWERLGEDEEELNLDDMEKMSKGSTGRLRIRQAKLSQAGAYQCIVDNGVAPAA
RGLVRLVVRFAPQVDHPTPLTKVAAAGDSTSSATLHCRARGVPNIDFTWTKNGVPLDLQDPRYTEHKYHQ
GVVHSSLLTIANVSAAQDYALFKCTATNALGSDHTNIQLVSISRPDPPLGLKVVSVSPHSVGLEWKPGFD
GGLPQRFQIRYEALESPGFLYMDVLPAQATTFTLTGLKPSTRYRIWLLASNALGDSGLTDKGIQVSITTP
GLDQAPEDTDQPLPTEQPPGPPRLPLLPVLFAVGGLLLLSNASCVGGLLWRRRLRRLAEEISEKTEAGSE
EDRIRNEYEESQWTGDRDTRSSTVSTAEVDPHYYSMRDFSPQLPPTLEEVSYRQAFTGIEDEDMAFPGHL
YDEVERVYGPPGVWGPLYDEVQMDPYDLRWPEVKYEDPRGIYDQVAADMDAGEPGSLPFELRGHLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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