CCDS Report for Consensus CDS

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Report for CCDS22468.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
22468.1	Public	Mus musculus	8	Rfx1	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22468.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000005600.5	ENSMUSP00000005600.5	Accepted	alive
		NCBI	NM_009055.4	NP_033081.3	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_033081.3	963	P48377	963	100%	0	0

Chromosomal Locations for CCDS 22468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)

Genome Browser links:

Chromosome	Start	Stop
8	84073772	84074069
8	84079863	84079972
8	84080125	84080208
8	84081115	84081222
8	84082648	84082761
8	84084082	84084174
8	84085573	84085667
8	84087706	84088072
8	84090111	84090292
8	84090950	84091069
8	84091366	84091478
8	84092535	84092653
8	84092780	84092889
8	84092974	84093125
8	84093203	84093300
8	84094727	84094876
8	84094950	84095158
8	84095396	84095549
8	84095628	84095673
8	84095797	84095966

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGGCAACACAGTCCTATGTTACTGAGCTACAGGCAGCCCCACAAGCATCCCAGCCGCCACAGGCCCCGC CCCAGGCCCTGCCCCAGCCACCACCCCCAGCAGCACCCCAGCCTCCTGCTGCAGCAACCCCCCAGCCCCA GTATGTCACCGAGCTGCAAAGCCCCCAGCCCCAGACGCAACCTCCGGGCAGCCAGAAGCAGTATGTGGCA GAGCTCCCTGCTGCCCCTGCACCCTCACAGCCTGCCACACCTGCCCCATCCCCTGTGGCTCAGCAGTATA TCGTGGTCACCGTATCGGAAGGTGCCATGCGGGCTAGTGAGACTGTGTCAGAAGCCAGCCCCAGTTCCAC GGCAAGCCAGACCGGTGTTCCCACCCAAGTGGTCCAGCAGGTGCAGGGCACCCAGCAGCGGCTGCTGGTC CAGGCAAGTGTGCAGGCCAAGCCAGGCCATGTGTCCCCCCTGCAGCTTACCAACATTCAGGTGCCACAGC AGGCTATCCCCACACAGCACCTGGTGGTGCAGAGCCCAGCACCGGGCACTAAGAGTGGCCAGGTCTCCCT GACGGTGCACAGTGCCCAGCAGGTGCACTCTGCTCCTGAGAGGTCACCAGTGCAGGCCAACAACTCCACC AGCAAGACAGCTGGGACTCCTGCGGCCACTGTGCAGCAACTACAGGTCCACAGCGTCCAGCAGAGTGTCC CTGTCACCCAAGAGAGGTCAGTAGTCCAGGCCACTCCACAGACCAAAGCTGGCCCGGTGCAGCAGCTGAC TGTGCAGGGACTGCAGCCAGTTCACGTTGCTCAAGAGGTACAGCAACTCCCTCAGGTGCCTGTCCCACAC GTGTATTCCAGCCAGGTGCAGTACGTGGAAGGTGGCGATGCCAGCTACACAGCCAGCGCCATCCGCTCTA GCACCTACCAGTACCCGGAGACGCCTATCTACACGCAGACGGCAGGCACCAGCTACTATGAGGCTTCGGG CACGGCTGCCCAGGTCAGCACGCCGGCTACTTCCCAGACGGTGGCCAGCAGCGGCTCAGTGCCCATGTAT GTGTCCGGCAGCCCAATTGTCGCCAGCTCATCCAGCAGCGAGGCTGGGGCCAGCAACAGCAGTGTGGGTG CAGGGGGCAATGGGGGAGGCGGCAGCAGTGGTGGTGGCAGTGGCGGCAGCAGCGGCAGCGGAGCAGGCAC CTACGTGATCCAAGGCGGCTACATGCTAGGCAATGCCAGCCAGTCTTACTCCCACACCACCCGTGCCTCA CCAGCCACAGTCCAGTGGCTCCTGGATAATTACGAGACCGCTGAGGGCGTGAGCCTGCCACGGAGCACCC TCTACTGCCACTACCTGCTGCACTGCCAAGAGCAGAAGCTGGAGCCAGTTAATGCCGCCTCTTTCGGCAA GCTCATCCGCTCGGTATTCATGGGTCTGCGCACGCGCCGTCTGGGCACCAGGGGCAACTCTAAGTACCAC TATTACGGCCTGCGGATCAAAGCCAGCTCACCCCTGCTGCGGCTGATGGAGGACCAGCAGCACATGGCCA TGCGGGGCCAGCCCTTCTCCCAGAAACAGAGGCTGAAGCCCATCCAGAAGATGGAGGGCGTGGCCAACGG TGTTGCCGTGGGGCAGCAGAGCACAGGGCTGTCAGACATCAGCGCCCAGGTGCAGCAGTACCAGCAGTTC CTGGATGCCTCCAGGAGCTTGCCTGATTTTGCTGAGTTGGACCTCCAGGGCAAAGTGCTGCCTGAGGGTG TCGGTCCTGGGGACATCAAGGCCTTCCAGGTCCTGTACCGGGAGCACTGTGAGGCCATCGTGGACGTCAT GGTAAACCTGCAGTTCACACTGGTAGAAACGCTGTGGAAGACCTTCTGGAGATACAACCTTAGCCAGCCC AGTGAGGCTCCACCACTGGCCGTGCATGACGAGGCCGAGAAGCGGCTGCCCAGGGCCAGTCTGGTGCTCC TCTCCAAGTTCCAGCCTGTGCTTCAGTGGACCAAGCACTGTGACAATGTGCTGTACCAGGGCCTGGTGGA GATCCTCATCCCTGATGTTCTGCGGCCCATCCCCAGTGCCTTGACCCAAGCAATCCGGAACTTTGCCAAG AGCCTGGAGAGCTGGCTCACCCATGCCATGGTGAACATCCCTGAGGAGATGCTGCGGGTGAAGGTGGCAG CAGCTGGCGCCTTCGCACAGACACTGCGGCGCTACACATCGCTCAACCACTTGGCGCAGGCGGCGCGGGC AGTGCTGCAGAACACTGCACAGATCAACCAGATGCTAAGCGACCTCAATCGGGTGGACTTCGCAAACGTC CAGGAGCAGGCCTCGTGGGTGTGTCGCTGTGAGGACCGTGTGGTGCAGCGTTTGGAGCAGGACTTCAAGG TGACGCTGCAGCAGCAGAACTCACTGGAGCAATGGGCAGCCTGGCTGGACGGCGTTGTGAGCCAGGTGCT CAAGCCCTACCAGGGCAGTTCCGGCTTCCCCAAGGCGGCCAAGCTCTTCCTCCTCAAGTGGTCCTTCTAC AGCTCCATGGTAATCCGGGACCTGACCCTGCGCAGTGCTGCCAGCTTCGGCTCCTTCCACCTCATCCGGC TGCTCTATGACGAGTACATGTACTACCTGATCGAGCACAGAGTGGCCCAGGCCAAGGGCGAGACCCCAAT CGCAGTCATGGGAGAGTTTGCAAACCTGGCCACCTCACTGAATCCCTTGGACCCTGACAAAGATGAAGAA GAAGAGGAGGAAGAGGAGAGTGAGGATGAGCTGCCACAAGACATCTCGCTGGCGGCTGGCAGCGAGTCTC CCGCACTAGGCCCTGAAGCTCTGGAGCCACCAGCGAAACTGGCGCGGACTGACACTCGTGGCCTCTTTGT GCAGGCCCTGCCCTCCAGCTAA
Translation (963 aa):
MATQSYVTELQAAPQASQPPQAPPQALPQPPPPAAPQPPAAATPQPQYVTELQSPQPQTQPPGSQKQYVA ELPAAPAPSQPATPAPSPVAQQYIVVTVSEGAMRASETVSEASPSSTASQTGVPTQVVQQVQGTQQRLLV QASVQAKPGHVSPLQLTNIQVPQQAIPTQHLVVQSPAPGTKSGQVSLTVHSAQQVHSAPERSPVQANNST SKTAGTPAATVQQLQVHSVQQSVPVTQERSVVQATPQTKAGPVQQLTVQGLQPVHVAQEVQQLPQVPVPH VYSSQVQYVEGGDASYTASAIRSSTYQYPETPIYTQTAGTSYYEASGTAAQVSTPATSQTVASSGSVPMY VSGSPIVASSSSSEAGASNSSVGAGGNGGGGSSGGGSGGSSGSGAGTYVIQGGYMLGNASQSYSHTTRAS PATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYH YYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQSTGLSDISAQVQQYQQF LDASRSLPDFAELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQP SEAPPLAVHDEAEKRLPRASLVLLSKFQPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAK SLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANV QEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEE EEEEEESEDELPQDISLAAGSESPALGPEALEPPAKLARTDTRGLFVQALPSS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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