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Report for CCDS25899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25899.1 Public Mus musculus 12 Foxg1 23 108 98 CCDS HistoryNCBI Gene:15228Re-query CCDS DB by CCDS ID:25899.1Re-query CCDS DB by GeneID:15228See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021333.4 ENSMUSP00000021333.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021333.4Link to Ensembl Protein Viewer:ENSMUSP00000021333.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021333Re-query CCDS DB by Protein ID:ENSMUSP00000021333
Original member Current member EBI ENSMUST00000179669.2 ENSMUSP00000136372.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179669.2Link to Ensembl Protein Viewer:ENSMUSP00000136372.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179669Re-query CCDS DB by Protein ID:ENSMUSP00000136372
Original member Current member NCBI NM_001160112.1 NP_001153584.1 Accepted alive Link to Nucleotide Sequence:NM_001160112.1Link to Protein Sequence:NP_001153584.1Re-query CCDS DB by Nucleotide ID:NM_001160112Re-query CCDS DB by Protein ID:NP_001153584Link to BLAST:NP_001153584.1
Original member Current member NCBI NM_008241.2 NP_032267.1 Accepted alive Link to Nucleotide Sequence:NM_008241.2Link to Protein Sequence:NP_032267.1Re-query CCDS DB by Nucleotide ID:NM_008241Re-query CCDS DB by Protein ID:NP_032267Link to BLAST:NP_032267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153584.1 481 Q60987 481 100% 0 0
NP_032267.1 481 Q60987 481 100% 0 0

Chromosomal Locations for CCDS 25899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 49384486 49385931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGCTGGACATGGGAGATAGGAAAGAGGTGAAAATGATTCCCAAGTCCTCGTTCAGCATCAACAGCCTGG
TCCCCGAGGCCGTCCAGAACGACAACCACCACGCGAGCCACGGCCACCACAACAGCCACCACCCCCAGCA
TCACCATCATCATCACCACCACCACCACCCGCCGCCGCCCGCGCCCCAGCCGCCTCCACCGCCGCCCCAG
CAGCAGCAGCAGCAGCCGCCCCCGGCCCCGCAGCCCCCGCAGGCGCGCGGCGCCCCAGCAGCCGACGACG
ACAAGGGTCCCCAGCCGCTCCTGCTCCCGCCCTCCACCGCCCTGGACGGGGCCAAGGCTGACGCACTTGG
AGCCAAAGGCGAGCCGGGCGGCGGGCCGGCGGAGCTGGCGCCCGTCGGGCCGGACGAGAAGGAGAAGGGC
GCGGGCGCCGGGGGGGAGGAGAAGAAAGGGGCGGGCGAGGGCGGCAAGGACGGGGAGGGGGGCAAGGAGG
GCGACAAGAAGAACGGCAAGTACGAGAAGCCGCCGTTCAGCTACAACGCGCTCATCATGATGGCCATCAG
GCAGAGTCCCGAGAAGCGCCTGACGCTCAATGGCATCTATGAGTTCATCATGAAGAACTTCCCCTACTAC
CGCGAGAACAAGCAGGGCTGGCAGAACTCCATCCGCCACAACCTGTCCCTCAACAAGTGCTTCGTGAAGG
TACCGCGCCACTACGACGACCCGGGCAAGGGCAACTACTGGATGCTCGACCCGTCGAGCGACGACGTGTT
CATCGGCGGCACGACCGGCAAGCTGCGGCGCCGCTCCACCACGTCTCGGGCCAAGCTGGCCTTTAAGCGC
GGGGCGCGCCTCACCTCCACCGGCCTCACCTTCATGGACCGCGCCGGCTCCCTCTACTGGCCCATGTCGC
CCTTCCTGTCCCTGCACCACCCCCGCGCCAGCAGCACTTTGAGTTACAACGGGACCACGTCGGCCTACCC
CAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGGGCAACAACCACTCCTTCTCCACC
GCCAACGGGCTGAGTGTGGACCGGCTGGTCAACGGGGAGATCCCGTACGCCACGCACCACCTCACGGCCG
CTGCGCTCGCCGCCTCGGTGCCCTGCGGCCTGTCGGTGCCCTGCTCCGGGACCTACTCCCTCAACCCCTG
CTCCGTCAACCTGCTCGCGGGCCAGACCAGTTACTTTTTCCCCCACGTCCCGCACCCGTCAATGACTTCG
CAGACCAGCACGTCCATGAGCGCCCGGGCCGCGTCCTCCTCTACGTCGCCGCAGGCCCCCTCGACCCTGC
CCTGTGAGTCTTTAAGACCCTCTTTGCCAAGTTTTACGACAGGACTGTCCGGGGGACTGTCTGATTATTT
CACACATCAAAATCAGGGGTCTTCTTCCAACCCTTTAATACATTAA

Translation (481 aa):
MLDMGDRKEVKMIPKSSFSINSLVPEAVQNDNHHASHGHHNSHHPQHHHHHHHHHHPPPPAPQPPPPPPQ
QQQQQPPPAPQPPQARGAPAADDDKGPQPLLLPPSTALDGAKADALGAKGEPGGGPAELAPVGPDEKEKG
AGAGGEEKKGAGEGGKDGEGGKEGDKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYY
RENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTTGKLRRRSTTSRAKLAFKR
GARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGTTSAYPSHPMPYSSVLTQNSLGNNHSFST
ANGLSVDRLVNGEIPYATHHLTAAALAASVPCGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTS
QTSTSMSARAASSSTSPQAPSTLPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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