NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24922.1 Public Mus musculus 11 Gps2 23 108 98 CCDS HistoryNCBI Gene:56310Re-query CCDS DB by CCDS ID:24922.1Re-query CCDS DB by GeneID:56310See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24922.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057884.5 ENSMUSP00000054072.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057884.5Link to Ensembl Protein Viewer:ENSMUSP00000054072.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057884Re-query CCDS DB by Protein ID:ENSMUSP00000054072
Original member Current member EBI ENSMUST00000072581.8 ENSMUSP00000072389.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072581.8Link to Ensembl Protein Viewer:ENSMUSP00000072389.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000072581Re-query CCDS DB by Protein ID:ENSMUSP00000072389
Original member Current member EBI ENSMUST00000116358.7 ENSMUSP00000112062.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116358.7Link to Ensembl Protein Viewer:ENSMUSP00000112062.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116358Re-query CCDS DB by Protein ID:ENSMUSP00000112062
Original member Current member NCBI NM_001357906.2 NP_001344835.1 Accepted alive Link to Nucleotide Sequence:NM_001357906.2Link to Protein Sequence:NP_001344835.1Re-query CCDS DB by Nucleotide ID:NM_001357906Re-query CCDS DB by Protein ID:NP_001344835Link to BLAST:NP_001344835.1
Original member Current member NCBI NM_019726.5 NP_062700.2 Accepted alive Link to Nucleotide Sequence:NM_019726.5Link to Protein Sequence:NP_062700.2Re-query CCDS DB by Nucleotide ID:NM_019726Re-query CCDS DB by Protein ID:NP_062700Link to BLAST:NP_062700.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344835.1 327 Q921N8 327 100% 0 0
NP_062700.2 327 Q921N8 327 100% 0 0

Chromosomal Locations for CCDS 24922.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69914340 69914433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69914752 69914861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69914933 69915045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69915139 69915218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69915308 69915390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69915631 69915784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69915865 69915954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69916033 69916112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69916198 69916293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69916420 69916503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGCCCGCACTCCTGGAGCGCCCCAAGCTTTCCAACGCTATGGCCAGGGCTCTGCACCGGCACATCATGA
TGGAGCGGGAGCGCAAACGGCAGGAGGAGGAAGAGGTGGACAAGATGATGGAACAGAAGATGAAAGAAGA
GCAGGAGAGAAGAAAGAAAAAGGAAATGGAAGAGAGAATGTCACTAGAGGAGACCAAGGAACAGATCCTG
AAGCTGCAGGAGAAGCTTTCTGCTCTACAGGAGGAGAAGCACCAGCTTTTCTTGCAGCTCAAGAAAGTTT
TGCATGAGGAAGAAAAACGGAGGCGAAAGGAACAGAGTGACTTAACCACTCTGACATCAGCTGCATACCA
GCAGAGCCTGACGGTTCATACAGGAACCCACCTCCTCAGCATGCAGGGGAGCCCTGGAGGACACAATCGC
CCAGGTACTCTGATGGCAGCTGACAGAGCCAAGCAGATGTTTGGACCACAAGTGCTTACGACCCGGCACT
ACGTGGGATCAGCAGCTGCTTTTGCAGGAACCCCAGAACATGGACAATTCCAAGGCAGTCCAGGGGGTGC
TTATGGGACTGCTCAGCCCCCACCTCATTATGGGCCAACACAACCAGCCTATAGTCCTAGCCAGCAGCTC
AGAGCCCCATCAGCATTTCCTGCAGTGCAGTACCTATCTCAGCCACAGCCACAACCCTATGCAGTGCATG
GCCACTTTCAGCCCACTCAGACAGGGTTCCTCCAGCCCGGCAGTACCCTCTCTTTGCAGAAACAGATGGA
GCATGCCAACCAGCAGACCAGCTTCTCGGACTCATCTTCTCTGCGGCCCATGCACCCCCAAGCTCTGCAT
CCAGCCCCTGGACTCCTGGCTTCCCCCCAGCTTCCCGTACAGATACAAGCAGCAGGGAAGTCAGGCTTTG
CCACCACCAGCCAACCTGGCCCCCGACTCCCTTTCATCCAACACAGCCAGAACCCAAGATTCTATCACAA
GTAA

Translation (327 aa):
MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERMSLEETKEQIL
KLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSLTVHTGTHLLSMQGSPGGHNR
PGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQL
RAPSAFPAVQYLSQPQPQPYAVHGHFQPTQTGFLQPGSTLSLQKQMEHANQQTSFSDSSSLRPMHPQALH
PAPGLLASPQLPVQIQAAGKSGFATTSQPGPRLPFIQHSQNPRFYHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH