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Report for CCDS83798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83798.1 Public Mus musculus 11 Rasgef1c 23 108 98 CCDS HistoryNCBI Gene:74563Re-query CCDS DB by CCDS ID:83798.1Re-query CCDS DB by GeneID:74563See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063444.2 ENSMUSP00000065619.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063444.2Link to Ensembl Protein Viewer:ENSMUSP00000065619.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000063444Re-query CCDS DB by Protein ID:ENSMUSP00000065619
Original member Current member NCBI NM_001347462.1 NP_001334391.1 Accepted alive Link to Nucleotide Sequence:NM_001347462.1Link to Protein Sequence:NP_001334391.1Re-query CCDS DB by Nucleotide ID:NM_001347462Re-query CCDS DB by Protein ID:NP_001334391Link to BLAST:NP_001334391.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334391.1 469 Q9D300-2 469 100% 0 0

Chromosomal Locations for CCDS 83798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49902654 49902656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49957034 49957216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49957363 49957485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49958600 49958737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49960398 49960598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49961154 49961228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49967337 49967426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49969496 49969598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49970044 49970123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49970206 49970301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49971369 49971464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49975627 49975750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49978408 49978480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49979495 49979519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGCAGGCATGCCCCGGACACTGACTGCCTCCGACATGGTCACCCCAGGCAGCCTCAGCCCGCCTCCCA
CAGAATCCACAGAAGGAGAGCAGGCCGGGCAGCCCCTCCTGGACGGAGCTCCATCCTCAGCCTCTTTGGA
CACCCTGATCCAACACCTCGTGCCCACAGCCGATTACTATCCCGAGAAAGCCTACATCTTCACCTTCCTG
CTGAGCTCTCGTCTCTTCATCGAGCCCCGAGAGCTCCTGGCTCGGGTGTGTCACCTGTGCATAGAGCAGC
AACAGCTGGACAAGCCGGTGCTGGACAAGGCCCGAGTCCGGAAGTTTGGTGCCAAATTGCTCCAGTTGTT
AGCCGAGTGGACTGAGACCTTCCCACGGGACTTTGAAGAGGAGTCCACCATTGGACACCTGACAGACGTG
GTGGGCCGCATCTCCCCGTGTGACGAGACCTACGGGAGCAGGGTACACCAGCTCCTGCAGACTCTGCACC
AGAAATTGGCGTCACTTGGCCAGGGACCAGAAAGCCTGGTGGGAGCCGACAAGCCCATCTCCTACAGGAC
CAAGCCTCCAGCCTCCATCCACAGGGAGCTCCTGGGTGTCTGCAGTGACCCCTACACGCTGGCCCAGCAA
CTGACCCACGTGGAGCTGGAGCGACTAAGGCACATTGGGCCCGAGGAGTTTGTCCAGGCTTTTGTGAACA
AGGACCCCCTGGCAGGCACAAAGCCCCGCTTCAGTGACAAGACGAACAACGTTGAGGCCTACGTGAAGTG
GTTCAACAGACTATGCTACCTGGTAGCAACGGAAATCTGCATGCCAGCCAAGAAGAAGCAGAGAGCGCAG
GTGATCGAGTTCTTCATCGATGTGGCCCGAGAGTGCTTCAACATCGGCAACTTCAACTCCCTCATGGCCA
TTATCTCTGGCATGAACATGAGCCCTGTCTCCAGGCTGAAGAAGACTTGGGCCAAAGTGAAAACAGCCAA
ATTCTTCATTCTGGAGCACCAGATGGACCCAACAGGGAACTTCTGCAACTATAGGACAGCCCTGCGTGGG
GCAGCCCACCGCTCACTCACTGCTCACAGCAGCAGGGAGAAGATCGTCATCCCCTTCTTCAGTCTGCTCA
TCAAGGACATTTACTTCCTCAATGAGGGCTGTGCCAACCGCCTTCCCAATGGGCATGTCAACTTTGAGAA
ATTTCTGGAACTGGCCAAGCAGGTTGGAGAATTCATTACTTGGAAACAAGTGGAATGTCCTTTCGAGCAA
GATCCGAGCATCACCCATTACCTGTACACTGCCCCCATCTTCAGCGAAGACGGTTTGTATTTGGCTTCCT
ATGAAAGCGAGAGCCCAGAGAGCCAGACAGAAAAGGAGAGGTGGAAATCTCTAAGATCTTCTATTCTGGG
GAAGACATGA

Translation (469 aa):
MAGMPRTLTASDMVTPGSLSPPPTESTEGEQAGQPLLDGAPSSASLDTLIQHLVPTADYYPEKAYIFTFL
LSSRLFIEPRELLARVCHLCIEQQQLDKPVLDKARVRKFGAKLLQLLAEWTETFPRDFEEESTIGHLTDV
VGRISPCDETYGSRVHQLLQTLHQKLASLGQGPESLVGADKPISYRTKPPASIHRELLGVCSDPYTLAQQ
LTHVELERLRHIGPEEFVQAFVNKDPLAGTKPRFSDKTNNVEAYVKWFNRLCYLVATEICMPAKKKQRAQ
VIEFFIDVARECFNIGNFNSLMAIISGMNMSPVSRLKKTWAKVKTAKFFILEHQMDPTGNFCNYRTALRG
AAHRSLTAHSSREKIVIPFFSLLIKDIYFLNEGCANRLPNGHVNFEKFLELAKQVGEFITWKQVECPFEQ
DPSITHYLYTAPIFSEDGLYLASYESESPESQTEKERWKSLRSSILGKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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