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Report for CCDS74395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74395.1 Public Homo sapiens 19 CLPTM1 24 110 108 CCDS HistoryNCBI Gene:1209Re-query CCDS DB by CCDS ID:74395.1Re-query CCDS DB by GeneID:1209See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74395.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000546079.5 ENSP00000443192.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546079.5Link to Ensembl Protein Viewer:ENSP00000443192.1Re-query CCDS DB by Nucleotide ID:ENST00000546079Re-query CCDS DB by Protein ID:ENSP00000443192
Original member Current member NCBI NM_001282176.2 NP_001269105.1 Accepted alive Link to Nucleotide Sequence:NM_001282176.2Link to Protein Sequence:NP_001269105.1Re-query CCDS DB by Nucleotide ID:NM_001282176Re-query CCDS DB by Protein ID:NP_001269105Link to BLAST:NP_001269105.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269105.1 567 O96005-3 567 100% 0 0

Chromosomal Locations for CCDS 74395.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44973208 44973210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44974439 44974597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44977343 44977460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44985218 44985303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44986455 44986575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44987179 44987423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44988080 44988173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44990395 44990585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44990850 44990945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44991238 44991373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44992233 44992400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44992611 44992897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGAACCTGCATGTGTACATCTCAGAGCACGAGCACTTTACAGACTTCAACGCCACGTCGGCACTCTTCT
GGGAACAGCACGATCTTGTGTATGGCGACTGGACTAGCGGCGAGAACTCAGACGGCTGCTACGAGCACTT
TGCTGAGCTCGATATCCCACAGAGCGTCCAGCAGAACGGCTCCATCTACATCCACGTTTACTTCACCAAG
AGTGGCTTCCACCCAGACCCCCGGCAGAAGGCCCTGTACCGCCGGCTTGCCACAGTCCACATGTCCCGGA
TGATCAACAAATACAAGCGCAGACGATTTCAGAAAACCAAGAACCTGCTGACAGGAGAGACAGAAGCGGA
CCCAGAAATGATCAAGAGGGCTGAGGACTATGGGCCTGTGGAGGTGATCTCCCATTGGCACCCCAACATC
ACCATCAACATCGTGGACGACCACACGCCGTGGGTGAAGGGCAGTGTGCCCCCTCCCCTGGATCAATATG
TGAAGTTCGACGCCGTGAGCGGTGACTACTATCCCATCATCTACTTCAATGACTACTGGAACCTGCAGAA
GGACTACTACCCCATCAACGAGAGCCTGGCCAGCCTGCCGCTCCGCGTCTCCTTCTGCCCACTCTCGCTT
TGGCGCTGGCAGCTCTATGCTGCCCAGAGCACCAAGTCGCCCTGGAACTTCCTGGGTGATGAGTTGTACG
AGCAGTCAGATGAGGAGCAGGACTCGGTGAAGGTGGCCCTGCTGGAGACCAACCCCTACCTGCTGGCGCT
CACCATCATCGTGTCTATCGTTCACAGTGTCTTCGAGTTCCTGGCCTTCAAGAATGATATCCAGTTCTGG
AACAGCCGGCAGTCCCTGGAGGGCCTGTCCGTGCGCTCCGTCTTCTTCGGCGTTTTCCAGTCATTCGTGG
TCCTCCTCTACATCCTGGACAACGAGACCAACTTCGTGGTCCAGGTCAGCGTCTTCATTGGGGTCCTCAT
CGACCTCTGGAAGATCACCAAGGTCATGGACGTCCGGCTGGACCGAGAGCACAGGGTGGCAGGAATCTTC
CCCCGCCTATCCTTCAAGGACAAGTCCACGTATATCGAGTCCTCGACCAAAGTGTATGATGATATGGCAT
TCCGGTACCTGTCCTGGATCCTCTTCCCGCTCCTGGGCTGCTATGCCGTCTACAGTCTTCTGTACCTGGA
GCACAAGGGCTGGTACTCCTGGGTGCTCAGCATGCTCTACGGCTTCCTGCTGACCTTCGGCTTCATCACC
ATGACGCCCCAGCTCTTCATCAACTACAAGCTCAAGTCTGTGGCCCACCTTCCCTGGCGCATGCTCACCT
ACAAGGCCCTCAACACATTCATCGACGACCTGTTCGCCTTTGTCATCAAGATGCCCGTTATGTACCGGAT
CGGCTGCCTGCGGGACGATGTGGTTTTCTTCATCTACCTCTACCAACGGTGGATCTACCGCGTCGACCCC
ACCCGAGTCAACGAGTTTGGCATGAGTGGAGAAGACCCCACAGCTGCCGCCCCCGTGGCCGAGGTTCCCA
CAGCAGCAGGGGCCCTCACGCCCACACCTGCACCCACCACGACCACCGCCACCAGGGAGGAGGCCTCCAC
GTCCCTGCCCACCAAGCCCACCCAGGGGGCCAGCTCTGCCAGCGAGCCCCAGGAAGCCCCTCCAAAGCCA
GCAGAGGACAAGAAAAAGGATTAG

Translation (567 aa):
MNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTK
SGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNI
TINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSL
WRWQLYAAQSTKSPWNFLGDELYEQSDEEQDSVKVALLETNPYLLALTIIVSIVHSVFEFLAFKNDIQFW
NSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKVMDVRLDREHRVAGIF
PRLSFKDKSTYIESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWYSWVLSMLYGFLLTFGFIT
MTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRDDVVFFIYLYQRWIYRVDP
TRVNEFGMSGEDPTAAAPVAEVPTAAGALTPTPAPTTTTATREEASTSLPTKPTQGASSASEPQEAPPKP
AEDKKKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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