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Report for CCDS54606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54606.1 Public Homo sapiens 3 TAFA1 24 110 108 CCDS HistoryNCBI Gene:407738Re-query CCDS DB by CCDS ID:54606.1Re-query CCDS DB by GeneID:407738See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54606.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000496687.1 ENSP00000417496.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000496687.1Link to Ensembl Protein Viewer:ENSP00000417496.1Re-query CCDS DB by Nucleotide ID:ENST00000496687Re-query CCDS DB by Protein ID:ENSP00000417496
Original member Current member EBI ENST00000478136.6 ENSP00000418575.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000478136.6Link to Ensembl Protein Viewer:ENSP00000418575.1Re-query CCDS DB by Nucleotide ID:ENST00000478136Re-query CCDS DB by Protein ID:ENSP00000418575
Original member Current member NCBI NM_001252216.2 NP_001239145.1 Accepted alive Link to Nucleotide Sequence:NM_001252216.2Link to Protein Sequence:NP_001239145.1Re-query CCDS DB by Nucleotide ID:NM_001252216Re-query CCDS DB by Protein ID:NP_001239145Link to BLAST:NP_001239145.1
Original member Current member NCBI NM_213609.4 NP_998774.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_213609.4Link to Protein Sequence:NP_998774.2Re-query CCDS DB by Nucleotide ID:NM_213609Re-query CCDS DB by Protein ID:NP_998774Link to BLAST:NP_998774.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239145.1 133 Q7Z5A9 133 100% 0 0
NP_998774.2 133 Q7Z5A9 133 100% 0 0

Chromosomal Locations for CCDS 54606.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 68006627 68006744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68417280 68417420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68538756 68538880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68544486 68544503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGGCAATGGTCTCTGCGATGTCCTGGGTCCTGTATTTGTGGATAAGTGCTTGTGCAATGCTACTCTGCC
ATGGATCCCTTCAGCACACTTTCCAGCAGCATCACCTGCACAGACCAGAAGGAGGGACGTGTGAAGTGAT
AGCAGCACACCGATGTTGTAACAAGAATCGCATTGAGGAGCGGTCACAAACAGTAAAGTGTTCCTGTCTA
CCTGGAAAAGTGGCTGGAACAACAAGAAACCGGCCTTCTTGCGTCGATGCCTCCATAGTGATTGGGAAAT
GGTGGTGTGAGATGGAGCCTTGCCTAGAAGGAGAAGAATGTAAGACACTCCCTGACAATTCTGGATGGAT
GTGCGCAACAGGCAACAAAATTAAGACCACGAGAATTCACCCAAGAACCTAA

Translation (133 aa):
MAMVSAMSWVLYLWISACAMLLCHGSLQHTFQQHHLHRPEGGTCEVIAAHRCCNKNRIEERSQTVKCSCL
PGKVAGTTRNRPSCVDASIVIGKWWCEMEPCLEGEECKTLPDNSGWMCATGNKIKTTRIHPRT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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