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Report for CCDS45865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45865.1 Public Homo sapiens 18 RPL17 24 110 108 CCDS HistoryNCBI Gene:6139Re-query CCDS DB by CCDS ID:45865.1Re-query CCDS DB by GeneID:6139See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45865.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000579248.5 ENSP00000462023.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000579248.5Link to Ensembl Protein Viewer:ENSP00000462023.1Re-query CCDS DB by Nucleotide ID:ENST00000579248Re-query CCDS DB by Protein ID:ENSP00000462023
Original member Current member EBI ENST00000580261.6 ENSP00000462385.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000580261.6Link to Ensembl Protein Viewer:ENSP00000462385.1Re-query CCDS DB by Nucleotide ID:ENST00000580261Re-query CCDS DB by Protein ID:ENSP00000462385
Original member Current member EBI ENST00000577910.1 ENSP00000463338.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000577910.1Link to Ensembl Protein Viewer:ENSP00000463338.1Re-query CCDS DB by Nucleotide ID:ENST00000577910Re-query CCDS DB by Protein ID:ENSP00000463338
Original member Current member EBI ENST00000579408.5 ENSP00000463842.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000579408.5Link to Ensembl Protein Viewer:ENSP00000463842.1Re-query CCDS DB by Nucleotide ID:ENST00000579408Re-query CCDS DB by Protein ID:ENSP00000463842
Original member Current member EBI ENST00000618613.5 ENSP00000480555.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618613.5Link to Ensembl Protein Viewer:ENSP00000480555.1Re-query CCDS DB by Nucleotide ID:ENST00000618613Re-query CCDS DB by Protein ID:ENSP00000480555
Original member Current member EBI ENST00000618619.4 ENSP00000482577.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618619.4Link to Ensembl Protein Viewer:ENSP00000482577.1Re-query CCDS DB by Nucleotide ID:ENST00000618619Re-query CCDS DB by Protein ID:ENSP00000482577
Original member Current member NCBI NM_000985.5 NP_000976.1 Accepted alive Link to Nucleotide Sequence:NM_000985.5Link to Protein Sequence:NP_000976.1Re-query CCDS DB by Nucleotide ID:NM_000985Re-query CCDS DB by Protein ID:NP_000976Link to BLAST:NP_000976.1
Original member Current member NCBI NM_001035006.5 NP_001030178.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001035006.5Link to Protein Sequence:NP_001030178.1Re-query CCDS DB by Nucleotide ID:NM_001035006Re-query CCDS DB by Protein ID:NP_001030178Link to BLAST:NP_001030178.1
Original member Current member NCBI NM_001199340.2 NP_001186269.1 Accepted alive Link to Nucleotide Sequence:NM_001199340.2Link to Protein Sequence:NP_001186269.1Re-query CCDS DB by Nucleotide ID:NM_001199340Re-query CCDS DB by Protein ID:NP_001186269Link to BLAST:NP_001186269.1
Original member Current member NCBI NM_001199341.3 NP_001186270.1 Accepted alive Link to Nucleotide Sequence:NM_001199341.3Link to Protein Sequence:NP_001186270.1Re-query CCDS DB by Nucleotide ID:NM_001199341Re-query CCDS DB by Protein ID:NP_001186270Link to BLAST:NP_001186270.1
Original member Current member NCBI NM_001199342.3 NP_001186271.1 Accepted alive Link to Nucleotide Sequence:NM_001199342.3Link to Protein Sequence:NP_001186271.1Re-query CCDS DB by Nucleotide ID:NM_001199342Re-query CCDS DB by Protein ID:NP_001186271Link to BLAST:NP_001186271.1
Original member Current member NCBI NM_001199343.3 NP_001186272.1 Accepted alive Link to Nucleotide Sequence:NM_001199343.3Link to Protein Sequence:NP_001186272.1Re-query CCDS DB by Nucleotide ID:NM_001199343Re-query CCDS DB by Protein ID:NP_001186272Link to BLAST:NP_001186272.1
Original member Current member NCBI NM_001199344.3 NP_001186273.1 Accepted alive Link to Nucleotide Sequence:NM_001199344.3Link to Protein Sequence:NP_001186273.1Re-query CCDS DB by Nucleotide ID:NM_001199344Re-query CCDS DB by Protein ID:NP_001186273Link to BLAST:NP_001186273.1
Original member Current member NCBI NM_001369556.1 NP_001356485.1 Accepted alive Link to Nucleotide Sequence:NM_001369556.1Link to Protein Sequence:NP_001356485.1Re-query CCDS DB by Nucleotide ID:NM_001369556Re-query CCDS DB by Protein ID:NP_001356485Link to BLAST:NP_001356485.1
Original member Current member NCBI NM_001369557.1 NP_001356486.1 Accepted alive Link to Nucleotide Sequence:NM_001369557.1Link to Protein Sequence:NP_001356486.1Re-query CCDS DB by Nucleotide ID:NM_001369557Re-query CCDS DB by Protein ID:NP_001356486Link to BLAST:NP_001356486.1
Original member Current member NCBI NM_001369558.1 NP_001356487.1 Accepted alive Link to Nucleotide Sequence:NM_001369558.1Link to Protein Sequence:NP_001356487.1Re-query CCDS DB by Nucleotide ID:NM_001369558Re-query CCDS DB by Protein ID:NP_001356487Link to BLAST:NP_001356487.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000976.1 184 P18621-1 184 100% 0 0
NP_001030178.1 184 P18621-1 184 100% 0 0
NP_001186269.1 184 P18621-1 184 100% 0 0
NP_001186270.1 184 P18621-1 184 100% 0 0
NP_001186271.1 184 P18621-1 184 100% 0 0
NP_001186272.1 184 P18621-1 184 100% 0 0
NP_001186273.1 184 P18621-1 184 100% 0 0
NP_001356485.1 184 P18621-1 184 100% 0 0
NP_001356486.1 184 P18621-1 184 100% 0 0
NP_001356487.1 184 P18621-1 184 100% 0 0

Chromosomal Locations for CCDS 45865.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 49488519 49488566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 49489359 49489550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 49490454 49490552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 49490793 49490927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 49491405 49491445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 49491532 49491571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGGTTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCCAATCTTCGTG
TTCACTTTAAGAACACTCGTGAAACTGCTCAGGCCATCAAGGGTATGCATATACGAAAAGCCACGAAGTA
TCTGAAAGATGTCACTTTACAGAAACAGTGTGTACCATTCCGACGTTACAATGGTGGAGTTGGCAGGTGT
GCGCAGGCCAAGCAATGGGGCTGGACACAAGGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACA
TGCTTAAAAACGCAGAGAGTAATGCTGAACTTAAGGGTTTAGATGTAGATTCTCTGGTCATTGAGCATAT
CCAAGTGAACAAAGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATG
AGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCAGAAGAGGAGG
TTGCCCAGAAGAAAAAGATATCCCAGAAGAAACTGAAGAAACAAAAACTTATGGCACGGGAGTAA

Translation (184 aa):
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRC
AQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYM
SSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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