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Report for CCDS29750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29750.1 Public Mus musculus 19 Sgms1 23 108 98 CCDS HistoryNCBI Gene:208449Re-query CCDS DB by CCDS ID:29750.1Re-query CCDS DB by GeneID:208449See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29750.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099514.9 ENSMUSP00000097114.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099514.9Link to Ensembl Protein Viewer:ENSMUSP00000097114.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099514Re-query CCDS DB by Protein ID:ENSMUSP00000097114
Original member Current member EBI ENSMUST00000142618.7 ENSMUSP00000117336.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142618.7Link to Ensembl Protein Viewer:ENSMUSP00000117336.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142618Re-query CCDS DB by Protein ID:ENSMUSP00000117336
Original member Current member EBI ENSMUST00000151289.8 ENSMUSP00000123395.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151289.8Link to Ensembl Protein Viewer:ENSMUSP00000123395.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151289Re-query CCDS DB by Protein ID:ENSMUSP00000123395
Original member Current member NCBI NM_001168525.1 NP_001161997.1 Accepted alive Link to Nucleotide Sequence:NM_001168525.1Link to Protein Sequence:NP_001161997.1Re-query CCDS DB by Nucleotide ID:NM_001168525Re-query CCDS DB by Protein ID:NP_001161997Link to BLAST:NP_001161997.1
Original member Current member NCBI NM_001168526.1 NP_001161998.1 Accepted alive Link to Nucleotide Sequence:NM_001168526.1Link to Protein Sequence:NP_001161998.1Re-query CCDS DB by Nucleotide ID:NM_001168526Re-query CCDS DB by Protein ID:NP_001161998Link to BLAST:NP_001161998.1
Original member Current member NCBI NM_001362423.1 NP_001349352.1 Accepted alive Link to Nucleotide Sequence:NM_001362423.1Link to Protein Sequence:NP_001349352.1Re-query CCDS DB by Nucleotide ID:NM_001362423Re-query CCDS DB by Protein ID:NP_001349352Link to BLAST:NP_001349352.1
Original member Current member NCBI NM_144792.5 NP_659041.3 Accepted alive Link to Nucleotide Sequence:NM_144792.5Link to Protein Sequence:NP_659041.3Re-query CCDS DB by Nucleotide ID:NM_144792Re-query CCDS DB by Protein ID:NP_659041Link to BLAST:NP_659041.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161997.1 419 Q8VCQ6-1 419 100% 0 0
NP_001161998.1 419 Q8VCQ6-1 419 100% 0 0
NP_001349352.1 419 Q8VCQ6-1 419 100% 0 0
NP_659041.3 419 Q8VCQ6-1 419 100% 0 0

Chromosomal Locations for CCDS 29750.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 32124345 32124524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32125226 32125392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32129541 32129694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32142746 32142863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32159524 32160164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGTTGTCTGCCAGGACCATGAAGGAAGTGGTTTACTGGTCACCCAAGAAGGTGGCAGACTGGCTGCTGG
AGAATGCTATGCCAGAATACTGTGAGCCTCTGGAGCACTTCACAGGCCAGGACTTAATCAACCTAACCCA
AGAGGATTTCAAAAAACCCCCACTGTACCGAGTCTCCTCTGACAATGGGCAGCGACTCTTAGACATGATA
GAGACCCTGAAGATGGAGCACCATATGGAAGCACACAAGAATGGCCACGCCAACGGACACCTCAGCATTG
GCGTTGACATTCCCAACCCCGATGGCAGCTTCAGCATCAAGACTAAACCCAACGGAATGCCAAATGGGTT
TAGGAAAGAGATGATCAAGATCCCCATGCCAGAACCGGAGCGCTCCCAGTATCCCATGGAGTGGGGCAAG
ACTTTCCTGGCCTTTCTTTATGCACTTTCCTGTTTTGTTCTCACTACAGTGATGATCTCGGTCGTCCATG
AACGAGTACCTCCTAAGGAGGTGCAGCCTCCACTACCGGACACGTTTTTTGACCATTTTAACCGGGTGCA
GTGGGCGTTTTCTATTTGCGAAATTAACGGCATGATCCTTGTAGGACTCTGGCTATTTCAGTGGCTGCTC
TTAAAATACAAGTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTA
TTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAGCTCTTTGGAGA
CTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCAC
AACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAG
AGTATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTG
TATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTC
TGGTGGTATCACACGATGGCCAATCAGCAAGTGCTTAAGGAAGCCTCCCAGATGAACCTCCTGGCCAGGG
TGTGGTGGTACAGGCCATTTCAGTACTTTGAAAAGAATGTCCAAGGAATTGTACCTCGATCTTACCATTG
GCCCTTCCCCTGGCCGGTAGTCCACCTTAGTAGGCAAGTTAAATATAGCCGGCTGGTAAACGACACATAA

Translation (419 aa):
MLSARTMKEVVYWSPKKVADWLLENAMPEYCEPLEHFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMI
ETLKMEHHMEAHKNGHANGHLSIGVDIPNPDGSFSIKTKPNGMPNGFRKEMIKIPMPEPERSQYPMEWGK
TFLAFLYALSCFVLTTVMISVVHERVPPKEVQPPLPDTFFDHFNRVQWAFSICEINGMILVGLWLFQWLL
LKYKSIISRRFFCIVGTLYLYRCITMYVTTLPVPGMHFNCSPKLFGDWEAQVRRIMKLIAGGGLSITGSH
NMCGDYLYSGHTVMLTLTYLFIKEYSPRRLWWYHWICWLLSVVGIFCILLAHDHYTVDVVVAYYITTRLF
WWYHTMANQQVLKEASQMNLLARVWWYRPFQYFEKNVQGIVPRSYHWPFPWPVVHLSRQVKYSRLVNDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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