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Report for CCDS49021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49021.1 Public Mus musculus 12 Klhl29 23 108 98 CCDS HistoryNCBI Gene:208439Re-query CCDS DB by CCDS ID:49021.1Re-query CCDS DB by GeneID:208439See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020958.8 ENSMUSP00000020958.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020958.8Link to Ensembl Protein Viewer:ENSMUSP00000020958.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020958Re-query CCDS DB by Protein ID:ENSMUSP00000020958
Original member Current member NCBI NM_001164493.1 NP_001157965.1 Accepted alive Link to Nucleotide Sequence:NM_001164493.1Link to Protein Sequence:NP_001157965.1Re-query CCDS DB by Nucleotide ID:NM_001164493Re-query CCDS DB by Protein ID:NP_001157965Link to BLAST:NP_001157965.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157965.1 875 Q80T74 875 100% 0 0

Chromosomal Locations for CCDS 49021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 5081151 5081334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5083892 5084036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5084294 5084487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5090536 5090716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5090919 5091101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5091242 5091440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5093486 5093745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5094817 5095019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5102689 5102827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5137423 5137935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5140567 5140708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 5209932 5210216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGTCCAGGCACCACAGCCGCTTCGAAAGAGATTACCGCATAGGCTGGGACCGCCGTGAGTGGAGCGTCA
ATGGGACCCACGGGGCCACCAGCGTCTGCAGCGTCACCTCCGGTGCTGGTGGCAGCACAGCCAGCAGTCT
CAGCGCAAGACCGGGCCTCCTACCACTGCCTGTGGTACCCTCCCGGCTGCCCACACCCGCCACGGCTCCT
GCTCCCTGCACGACCGGCAGCAGTGAAGCTATCACCAGTCTTGTGGTCAGCTCGGCCTCCGCAGCCACCA
CCAAGGCTCCCGGCATCTCCAAAGCTGACAATCAGTCTCAAGGACTCACGACCAGCATCCGATGGGGGCA
GACGCCTGTCAATCAGTCCACGCCCTGGGACACTGATGAGCCGCCCTCCAAACAGATGAGGGAGAGCGAC
AATCCAGGCACAGGGCCATGGGTGACCACGGTGGCCGCTGGAAACCAGCCTTCCCTGATCACACACTCCT
ATGGAGTGACCCAGCCTCCCACCTTCAGTCCTGCTGTGAACGTCCAGGCCCCCGTCATCGGGGTGACTCC
CTCACTGCCTCCCCATGTGGGACCCCAGCTCCCGCTGATACCAGGCCACTACTCACTCCCACAGCCGCCC
TCCCAACCGCTGAGCAGTGTGGTGGTGAACATGCCTGCTCAGGCCCTGTATGCCAGCCCTCAGCCCCTGG
CAGTATCCACTTTGCCTGGAGTAGGGCAGGTATCCCGCCCGGGACCCACCCCTGTGGGCAACGGCCACAT
GGCAGGGCCCCTGCTGCCTCCACCTCCACCAGCCCAGCCGTCCGCAGCTCTCCCCAGTAGTGTTCCTGCC
ACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCGGACCATTGGAGTGGGGAAGT
ATGAGTTCACCGACCCAGGGCACCCTAAAGAAATGTTGAAGGAATTGAACCAGCAACGCAGAGCGAAAGC
ATTTACAGACCTGAAAATTGTTGTTGAAGGCAGAGAGTTTGAAGTCCACCAAAATGTTCTAGCTTCCTGC
AGCTTGTATTTCAAGGACCTGATTCAAAGGTCGGTGCAGGACAGCAGCCAGAGCAGCCGGGAGAAGTTGG
AGCTGGTGCTCTCCAACCTGCAGGCTGATGTCCTGGAGCTACTGCTAGAGTTTGTCTACACGGGGTCGCT
GGTCATCGACTCAGCCAATGCCAAGACTCTACTCGAGGCGGCCAGCAAGTTCCAGTTTCACACCTTCTGC
AAAGTCTGTGTGTCCTTTCTAGAGAAGCAGCTGACTGCCAGCAACTGTCTGGGAGTGCTGGCCATGGCTG
AGGCCATGCAGTGCAGTGAGCTCTACCACATGGCCAAGGCCTTCGCGCTGCAGATCTTCCCCGAGGTGGC
CGCCCAGGAGGAGATCCTCAGCATCTCTAAAGATGACTTCATTGCCTACGTCTCCAATGACAGCCTCAAT
ACCAAGGCCGAGGAGCTGGTCTACGAGACTGTCATCAAGTGGATCAAGAAGGACCCAGCAACACGTGCAC
AGTATGCAGCAGAGCTCCTGGCTGCCGTCCGCCTCCCGTTCATCCATCCCAGCTATCTGCTCAATGTGGT
GGACAACGAAGAGCTGATCAAGTCATCAGAAGCATGTCGGGACCTGGTCAATGAGGCTAAACGCTACCAC
ATGCTACCCCACGCCCGGCAGGAGATGCAGACACCCCGAACCCGGCCCCGCCTCTCTGCAGGTGTGGCCG
AGGTCATCGTTTTGGTTGGGGGCCGTCAGATGGTTGGGATGACCCAGCGCTCACTGGTGGCTGTCACCTG
CTGGAACCCACAGAACAACAAGTGGTACCCCTTGGCCTCGCTGCCTTTCTATGACCGCGAGTTCTTCAGT
GTAGTGAGTGCTGGGGACAACATCTACCTCTCAGGTGGTATGGAATCAGGGGTGACGCTGGCTGATGTCT
GGTGCTACATGTCCCTGTTGGATAACTGGAACCTGGTCTCCAGAATGACTGTCCCTCGTTGTCGCCACAA
TAGTCTCGTCTATGATGGGAAGATCTACACTCTTGGGGGACTTGGAGTGGCCGGCAACGTGGACCATGTG
GAGAGGTACGACACTATCACTAACCAATGGGAGGCAGTAGCCCCTCTGCCCAAGGCGGTACATTCGGCAG
CGGCCACTGTGTGTGGTGGCAAAATCTACGTGTTTGGTGGCGTGAATGAGGCAGGCCGAGCGGCAGGTGT
CCTCCAGTCCTATGTGCCACAGACCAACACGTGGAGCTTCATTGAGTCCCCAATGATAGACAACAAATAT
GCACCTGCTGTCACCCTCAATGGCTTTGTGTTCATCCTGGGAGGAGCTTATGCCAGAGCCACCACCATCT
ACGACCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACATGAATCACTCTCGGCAGTTCTGCAGTGCCGT
GGTGCTCGATGGTAAAATTTATGCTACTGGAGGCATCGTGAGCAGTGAGGGACCAGCCCTGGGCAACATG
GAAGCCTACGAGCCCACAACCAACACATGGACCCTCTTACCCCACATGCCCTGTCCTGTGTTCAGACACG
GCTGTGTTGTGATAAAAAAGTATATTCAAAGCGGCTGA

Translation (875 aa):
MSRHHSRFERDYRIGWDRREWSVNGTHGATSVCSVTSGAGGSTASSLSARPGLLPLPVVPSRLPTPATAP
APCTTGSSEAITSLVVSSASAATTKAPGISKADNQSQGLTTSIRWGQTPVNQSTPWDTDEPPSKQMRESD
NPGTGPWVTTVAAGNQPSLITHSYGVTQPPTFSPAVNVQAPVIGVTPSLPPHVGPQLPLIPGHYSLPQPP
SQPLSSVVVNMPAQALYASPQPLAVSTLPGVGQVSRPGPTPVGNGHMAGPLLPPPPPAQPSAALPSSVPA
TNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPKEMLKELNQQRRAKAFTDLKIVVEGREFEVHQNVLASC
SLYFKDLIQRSVQDSSQSSREKLELVLSNLQADVLELLLEFVYTGSLVIDSANAKTLLEAASKFQFHTFC
KVCVSFLEKQLTASNCLGVLAMAEAMQCSELYHMAKAFALQIFPEVAAQEEILSISKDDFIAYVSNDSLN
TKAEELVYETVIKWIKKDPATRAQYAAELLAAVRLPFIHPSYLLNVVDNEELIKSSEACRDLVNEAKRYH
MLPHARQEMQTPRTRPRLSAGVAEVIVLVGGRQMVGMTQRSLVAVTCWNPQNNKWYPLASLPFYDREFFS
VVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWNLVSRMTVPRCRHNSLVYDGKIYTLGGLGVAGNVDHV
ERYDTITNQWEAVAPLPKAVHSAAATVCGGKIYVFGGVNEAGRAAGVLQSYVPQTNTWSFIESPMIDNKY
APAVTLNGFVFILGGAYARATTIYDPEKGNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALGNM
EAYEPTTNTWTLLPHMPCPVFRHGCVVIKKYIQSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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