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Report for CCDS51026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51026.1 Public Mus musculus 3 Ap4b1 23 108 98 CCDS HistoryNCBI Gene:67489Re-query CCDS DB by CCDS ID:51026.1Re-query CCDS DB by GeneID:67489See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51026.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106823.7 ENSMUSP00000102436.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106823.7Link to Ensembl Protein Viewer:ENSMUSP00000102436.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106823Re-query CCDS DB by Protein ID:ENSMUSP00000102436
Original member Current member NCBI NM_001163553.1 NP_001157025.1 Accepted alive Link to Nucleotide Sequence:NM_001163553.1Link to Protein Sequence:NP_001157025.1Re-query CCDS DB by Nucleotide ID:NM_001163553Re-query CCDS DB by Protein ID:NP_001157025Link to BLAST:NP_001157025.1

Chromosomal Locations for CCDS 51026.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103809945 103810057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103812085 103812309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103812777 103812907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103813260 103813407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103814825 103815321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103818804 103818907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103820254 103820461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103820678 103820959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103821336 103821760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGCCATACCTTGGCTCTGAGGACGTGGTGAAGGAACTGAAGAAGGCTCTGTGTAACCCTCATATTCAGG
CTGATAGGCTGCGCTACCGGAATGTCATCCAGCGAGTTATTAGGCACATGACTCAGGGCTTGGACATGTC
TGATGTTTTCATGGAAATGGTAAAGGCCAGTGCCACTGTAGATATTGTTCAGAAAAAGTTGGTTTATCTG
TATATGGGCACATACGCACCTTTAAAACCAGATCTAGCACTCTTGGCCATCAATACGCTCTGCAAAGACT
GCTCAGACCCCAACCCAATGGTTCGAGGACTGGCACTACGGAGTATGTGTAGCCTCAGGATGCCTGGTGT
GCAGGAATATATCCAGCAGCCTGTTGTTAACGGTCTGCGTGATAAAGCTTCATATGTCAGAAGAGTAGCA
GTCCTCGGCTGTGCCAAAATGCATAATCTTCACGGAGACTCTGAAGTGGATGGTGCTCTCGTCAATGAGT
TGTACAGTCTTCTGCGTGACCAGGATCCAATTGTGGTTGTGAACTGTCTGAGGTCTCTAGAGGAAATTTT
AAAGCAGGAAGGAGGTGTTGTCATTAATAAGCCCATTGCCCACCATCTCTTAAATAGAATGTCAAAACTG
GACCAGTGGGGCCAGGCTGAAGTACTGAACTTTCTGCTCCGCTACCAACCCCGCAGTGAGGAGGAACTGT
TTGATATTCTCAATTTGTTGGACAGCTATCTCAAGAGCAGCAGTACTGGCGTGGTGATGGGAGCCACCAA
ACTCTTTCTGATTTTGGCAAAAAAGTTCCCCCACGTGCAGACTGATGTGCTTGTGCGAGTCAAGGGGCCC
TTGCTGGCCGCCTGCTCTTCAGAGAGCCGTGAGCTCTGTTTTGCTGCTCTCTGCCATGTCCGCCAGGTCT
TGCACAGTTTGCCAGGTCACTTTAGCAGTCACTACAAAAAGTTTTTTTGCTCTTACTCGGAACCCCACTA
CATCAAGCTCCAGAAGGTGGAGGTGCTGTGCGAGCTGGTGAATGACGAGAACGTGCAGCAGGTGCTGGAA
GAGCTGCGTGGCTACTGCACTGACGTGGCTGCTGACTTTGCACAGGCTGCCATCTTCGCCATAGTGGTCG
TGCAGACTTTCCGAGACCTGGTCTGGTTATGCCCTCAGTGTACTGAAGCTGTGTGTCAGGCTCTGCCCGG
CTGTGAGGAGAACATTCAAGACAGTGAGGGGAAACAGGCACTTATTTGGTTACTTGGGGTCCACGGGGAA
AAAATCCCCAATGCTCCTTATGTGTTGGAGGACTTTGTAGACAACGTGAAGTCAGAGACATTTCCCGCTG
TTAAGATGGAGCTACTGACCGCACTGATGCGCCTTGTCCTCTCGCGCCCGGCTGAGTGCCAGGACATGCT
GGGACGGCTGCTGCATTACTGCATAGAGGAAGAAAAGGATATGGCTGTACGGGACCGGGGTCTCTTCTAT
TACCGCCTCCTGTTAGTTGGCATTGATAAAGTTAAGCAGATCCTGTGTAGTCCTAAGTCTGACCCTTCTC
TTGGACTTTTGGAGGATCAGCCGGAACGACCAGTAAATAGCTGGGCTTCAGACTTCAACACACTGGCGCC
AGTGTATGGCAGAGCCCACTGGGCAACTATCTCTAAATGCCAGCAGGTAGAGCGGCATCGCCTTGAGCTT
CCCCACAATGCATCCTTTGCCACATCAGGGCACTTGATTTCCGAGGAGAACAAAGAAGGTGCACAAGAAC
CTGATTCTGACACTCTCATGCTGGTCCCCAATCTCCAGCTTACTGCTGAGTATTTTGAGAAGACGTGGCT
TAGCCTCAGAGTTAGTTACCAGCAGGTGTTTCCTTGGCAGGGAGAAGTCCAGCCTGACACTCTACAAATG
GCTCTAAAAGTAGTGAACATTCAGACCATCGCAATGAGCAGAGCTGGGGCACAGCCCTGGAAAGCCTACC
TCAGTGCTCAGGATGATACTGGCGGCCTTTTCTTAGCTGAATTGCTACTGAAGCCTGAGAACTCAGAGAT
GCAAATCTCTGTGAAGCAAAGTAAGGCAAGGACTGAATCCCTGCATGGTTTTGTTTCTGTCCTGGAAACT
GTGATTGGAACAGTTGGAGACATAAAATCTTAA

Translation (710 aa):
MPYLGSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRHMTQGLDMSDVFMEMVKASATVDIVQKKLVYL
YMGTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPVVNGLRDKASYVRRVA
VLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKL
DQWGQAEVLNFLLRYQPRSEEELFDILNLLDSYLKSSSTGVVMGATKLFLILAKKFPHVQTDVLVRVKGP
LLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLE
ELRGYCTDVAADFAQAAIFAIVVVQTFRDLVWLCPQCTEAVCQALPGCEENIQDSEGKQALIWLLGVHGE
KIPNAPYVLEDFVDNVKSETFPAVKMELLTALMRLVLSRPAECQDMLGRLLHYCIEEEKDMAVRDRGLFY
YRLLLVGIDKVKQILCSPKSDPSLGLLEDQPERPVNSWASDFNTLAPVYGRAHWATISKCQQVERHRLEL
PHNASFATSGHLISEENKEGAQEPDSDTLMLVPNLQLTAEYFEKTWLSLRVSYQQVFPWQGEVQPDTLQM
ALKVVNIQTIAMSRAGAQPWKAYLSAQDDTGGLFLAELLLKPENSEMQISVKQSKARTESLHGFVSVLET
VIGTVGDIKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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