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Report for CCDS49873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49873.1 Public Mus musculus 16 Cep97 23 108 98 CCDS HistoryNCBI Gene:74201Re-query CCDS DB by CCDS ID:49873.1Re-query CCDS DB by GeneID:74201See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121129.7 ENSMUSP00000112502.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121129.7Link to Ensembl Protein Viewer:ENSMUSP00000112502.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121129Re-query CCDS DB by Protein ID:ENSMUSP00000112502
Original member Current member NCBI NM_001159365.1 NP_001152837.1 Accepted alive Link to Nucleotide Sequence:NM_001159365.1Link to Protein Sequence:NP_001152837.1Re-query CCDS DB by Nucleotide ID:NM_001159365Re-query CCDS DB by Protein ID:NP_001152837Link to BLAST:NP_001152837.1

Chromosomal Locations for CCDS 49873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 55924821 55924850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55924969 55925070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55927721 55927879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55930466 55930608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55934753 55934795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGCGGTGGCGCGAGTCGACGGGGCTCTGGCTCCGGGAGAAGGATCAGTGGTGAACTGGTCAGGCCAGG
GACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGCTGATGTCCATACCTTGATTCTGGATAAAAATCA
GATTATTAAACTGGAGAACCTAGAGAAATGCAAACAGTTAATCCAGTTGTCAGTGGCTAACAATCGCTTG
GTACGGATGATGGGTGTGGCCAAACTGACTCAACTCCGAGTGTTAAATTTACCTCATAATAGTATTGGCT
GCGTGGAAGGCCTGAAGGACCTAGTCCATTTGGAGTGGCTGAATTTAGCGGGCAATAATCTGAAGACCAT
GGAGCAAGTCAATAGCTGTACGGCTCTTCAGCACCTTGACTTATCAGACAATAACATTCCCCAGATAGGT
GATGTGTCGAAATTGATATCTTTGAAGATGCTGTCTTCAGTACTAAGTATAACTTAA

Translation (158 aa):
MAVARVDGALAPGEGSVVNWSGQGLQKLGANLPCEADVHTLILDKNQIIKLENLEKCKQLIQLSVANNRL
VRMMGVAKLTQLRVLNLPHNSIGCVEGLKDLVHLEWLNLAGNNLKTMEQVNSCTALQHLDLSDNNIPQIG
DVSKLISLKMLSSVLSIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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