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Report for CCDS43311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43311.1 Public Homo sapiens 5 SELENOP 24 110 108 CCDS HistoryNCBI Gene:6414Re-query CCDS DB by CCDS ID:43311.1Re-query CCDS DB by GeneID:6414See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 43311.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514985.6 ENSP00000420939.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000514985.6Link to Ensembl Protein Viewer:ENSP00000420939.1Re-query CCDS DB by Nucleotide ID:ENST00000514985Re-query CCDS DB by Protein ID:ENSP00000420939
Original member Current member EBI ENST00000506577.5 ENSP00000425915.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506577.5Link to Ensembl Protein Viewer:ENSP00000425915.1Re-query CCDS DB by Nucleotide ID:ENST00000506577Re-query CCDS DB by Protein ID:ENSP00000425915
Original member Current member EBI ENST00000511224.5 ENSP00000427671.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511224.5Link to Ensembl Protein Viewer:ENSP00000427671.1Re-query CCDS DB by Nucleotide ID:ENST00000511224Re-query CCDS DB by Protein ID:ENSP00000427671
Original member Current member NCBI NM_001085486.3 NP_001078955.1 Accepted alive Link to Nucleotide Sequence:NM_001085486.3Link to Protein Sequence:NP_001078955.1Re-query CCDS DB by Nucleotide ID:NM_001085486Re-query CCDS DB by Protein ID:NP_001078955Link to BLAST:NP_001078955.1
Original member Current member NCBI NM_005410.4 NP_005401.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005410.4Link to Protein Sequence:NP_005401.3Re-query CCDS DB by Nucleotide ID:NM_005410Re-query CCDS DB by Protein ID:NP_005401Link to BLAST:NP_005401.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078955.1 381 P49908 381 100% 0 0
NP_005401.3 381 P49908 381 100% 0 0

Chromosomal Locations for CCDS 43311.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 42800720 42801331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42804656 42804773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42806896 42807108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42808151 42808353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 59
replace the symbol * (codon TGA) with U at amino acid position 300
replace the symbol * (codon TGA) with U at amino acid position 318
replace the symbol * (codon TGA) with U at amino acid position 330
replace the symbol * (codon TGA) with U at amino acid position 345
replace the symbol * (codon TGA) with U at amino acid position 352
replace the symbol * (codon TGA) with U at amino acid position 367
replace the symbol * (codon TGA) with U at amino acid position 369
replace the symbol * (codon TGA) with U at amino acid position 376
replace the symbol * (codon TGA) with U at amino acid position 378

Nucleotide Sequence (1146 nt):
ATGTGGAGAAGCCTGGGGCTTGCCCTGGCTCTCTGTCTCCTCCCATCGGGAGGAACAGAGAGCCAGGACC
AAAGCTCCTTATGTAAGCAACCCCCAGCCTGGAGCATAAGAGATCAAGATCCAATGCTAAACTCCAATGG
TTCAGTGACTGTGGTTGCTCTTCTTCAAGCCAGCTGATACCTGTGCATACTGCAGGCATCTAAATTAGAA
GACCTGCGAGTAAAACTGAAGAAAGAAGGATATTCTAATATTTCTTATATTGTTGTTAATCATCAAGGAA
TCTCTTCTCGATTAAAATACACACATCTTAAGAATAAGGTTTCAGAGCATATTCCTGTTTATCAACAAGA
AGAAAACCAAACAGATGTCTGGACTCTTTTAAATGGAAGCAAAGATGACTTCCTCATATATGATAGATGT
GGCCGTCTTGTATATCATCTTGGTTTGCCTTTTTCCTTCCTAACTTTCCCATATGTAGAAGAAGCCATTA
AGATTGCTTACTGTGAAAAGAAATGTGGAAACTGCTCTCTCACGACTCTCAAAGATGAAGACTTTTGTAA
ACGTGTATCTTTGGCTACTGTGGATAAAACAGTTGAAACTCCATCGCCTCATTACCATCATGAGCATCAT
CACAATCATGGACATCAGCACCTTGGCAGCAGTGAGCTTTCAGAGAATCAGCAACCAGGAGCACCAAATG
CTCCTACTCATCCTGCTCCTCCAGGCCTTCATCACCACCATAAGCACAAGGGTCAGCATAGGCAGGGTCA
CCCAGAGAACCGAGATATGCCAGCAAGTGAAGATTTACAAGATTTACAAAAGAAGCTCTGTCGAAAGAGA
TGTATAAATCAATTACTCTGTAAATTGCCCACAGATTCAGAGTTGGCTCCTAGGAGCTGATGCTGCCATT
GTCGACATCTGATATTTGAAAAAACAGGGTCTGCAATCACCTGACAGTGTAAAGAAAACCTCCCATCTTT
ATGTAGCTGACAGGGACTTCGGGCAGAGGAGAACATAACTGAATCTTGTCAGTGACGTTTGCCTCCAGCT
GCCTGACAAATAAGTCAGCAGCTTATACCCACAGAAGCCAGTGCCAGTTGACGCTGAAAGAATCAGGCAA
AAAAGTGAGAATGACCTTCAAACTAA

Translation (381 aa):
MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUYLCILQASKLE
DLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLNGSKDDFLIYDRC
GRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTLKDEDFCKRVSLATVDKTVETPSPHYHHEHH
HNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKR
CINQLLCKLPTDSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPA
AUQISQQLIPTEASASURUKNQAKKUEUPSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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