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Report for CCDS40723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40723.1 Public Mus musculus 9 Rasgrf1 23 108 98 CCDS HistoryNCBI Gene:19417Re-query CCDS DB by CCDS ID:40723.1Re-query CCDS DB by GeneID:19417See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034909.10 ENSMUSP00000034909.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034909.10Link to Ensembl Protein Viewer:ENSMUSP00000034909.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034909Re-query CCDS DB by Protein ID:ENSMUSP00000034909
Original member Current member NCBI NM_001039655.1 NP_001034744.1 Accepted alive Link to Nucleotide Sequence:NM_001039655.1Link to Protein Sequence:NP_001034744.1Re-query CCDS DB by Nucleotide ID:NM_001039655Re-query CCDS DB by Protein ID:NP_001034744Link to BLAST:NP_001034744.1

Chromosomal Locations for CCDS 40723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 89909998 89910273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89911448 89911592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89915492 89915607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGCAGAAAGCCATCCGGCTTAACGATGGCCACGTCGTGACCCTGGGACTGCTGGCACAGAAGGACGGCA
CGCGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCT
CCAGAACCTGCTTTTCTACTTCGAAAGCGACTCCAGCCCTCGGCCCTCGGGGCTCTACCTGCTCGAGGGA
AGTATCTGTAAACGCGCGCCCTCCCCCAAGCGAGGGACCTCCTCCAAGGAGTCCGGCGAGAAACAGCGTC
ATAGCAGGAGTCGACGTCGACGTAATGTTCTGAGAAGACAACCAACCAGGATCTCAAAAACATTCAGGCT
GGTGGCAATTGAATTGACTGGGATGACAGCCACCCTTGAAGTCTCCTTCTCCATAATTAGGACAGAGATC
GGTACCGTTGCTCCAGCTCCACAGACATGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAG
TGGAGTCGAAGCGTCTCTTCCACCATCCCTGTAGATTGATCATTTAG

Translation (178 aa):
MQKAIRLNDGHVVTLGLLAQKDGTRKGYLSKRSADNPKWQTKWFALLQNLLFYFESDSSPRPSGLYLLEG
SICKRAPSPKRGTSSKESGEKQRHSRSRRRRNVLRRQPTRISKTFRLVAIELTGMTATLEVSFSIIRTEI
GTVAPAPQTWMGKPEDLTTLRDRVESKRLFHHPCRLII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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