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Report for CCDS21636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21636.1 Public Mus musculus 7 Or52e8b 23 108 98 CCDS HistoryNCBI Gene:258147Re-query CCDS DB by CCDS ID:21636.1Re-query CCDS DB by GeneID:258147See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073102.1 ENSMUSP00000072847.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073102.1Link to Ensembl Protein Viewer:ENSMUSP00000072847.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000073102Re-query CCDS DB by Protein ID:ENSMUSP00000072847
Original member Current member NCBI NM_001011848.1 NP_001011848.1 Accepted alive Link to Nucleotide Sequence:NM_001011848.1Link to Protein Sequence:NP_001011848.1Re-query CCDS DB by Nucleotide ID:NM_001011848Re-query CCDS DB by Protein ID:NP_001011848Link to BLAST:NP_001011848.1

Chromosomal Locations for CCDS 21636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105024025 105024966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGTCCCTGTATAACATCACAGAAGTCCATCCTTCTTCGTTCCTCCTGCTGGGCATCCCAGGGCTAGAAT
ATGCACACATCTGGATTGGATTTCCCTTTTGTTTTCTCTATCTCATTGCAATTCTGGGAAATGCTGCTGT
TTTATTTGTGATCCAAACTGAACACAGTCTTCATGAGCCCATGTACTACTTCCTAGCCATGCTGGATTCC
ATTGACCTGGGACTGACCACAGCCACCATCCCCAAAATGCTGGGCATCTTCTGGTTCAATCTCAGGGAAA
TATCTTTTGGAGGTTGCCTTTCTCAGATGTTCTTCATCCACTTCTTCACGGTCATGGAAAGCATTATGTT
GTTGGCCATGGGCTTTGACCGCTACGTTGCCATTTGTAAGCCCCTTCAATATACTGTCATTCTAACCAAC
AAAGTCATTGGGGTCATTGCAGGTATTGCTGTGCTGAGGAGCCTATACATGGTTCTTCCAGTAGTGTTTC
TCCTCTTGAGGCTACCCTACTGTGGCCATCACATCATTCCTCATACTTACTGTGAACACATGGGCATCGC
CCGTCTAGCTTGTGCCAGCATCAAAGTCAACATCATGTTTGGTCTTAGCAACATTGCTCTCTTGCTCCTG
GATGTAGTTCTTATTATTCTCTCCTATGTCAGGATCCTCTATGCAGTGTTCTGCCTGCCCTCCCGGGAGG
CCAGGCTCAAGGCTCTCAATACTTGTGGCTCTCATATAGGTGTTATCTTAACCTTTTTTACTCCAGCATT
TTTCTCCTTCTTGACACATCGTTTTGGCCACAATGTGCCCCAATGTATCCACATTTTCTTGGCCAATCTT
TATGTGGTTGTCCCACCTGCCCTTAATCCTGTGATCTATGGGGTAAGGACCAAGCAAATTCGGGAGCAAG
TAATGAGGATTTTGTTCCGTAAAGATCACTAG

Translation (313 aa):
MSLYNITEVHPSSFLLLGIPGLEYAHIWIGFPFCFLYLIAILGNAAVLFVIQTEHSLHEPMYYFLAMLDS
IDLGLTTATIPKMLGIFWFNLREISFGGCLSQMFFIHFFTVMESIMLLAMGFDRYVAICKPLQYTVILTN
KVIGVIAGIAVLRSLYMVLPVVFLLLRLPYCGHHIIPHTYCEHMGIARLACASIKVNIMFGLSNIALLLL
DVVLIILSYVRILYAVFCLPSREARLKALNTCGSHIGVILTFFTPAFFSFLTHRFGHNVPQCIHIFLANL
YVVVPPALNPVIYGVRTKQIREQVMRILFRKDH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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