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Report for CCDS94706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94706.1 Public Homo sapiens Y PCDH11Y 24 110 108 CCDS HistoryNCBI Gene:83259Re-query CCDS DB by CCDS ID:94706.1Re-query CCDS DB by GeneID:83259See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94706.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000698851.1 ENSP00000513983.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000698851.1Link to Ensembl Protein Viewer:ENSP00000513983.1Re-query CCDS DB by Nucleotide ID:ENST00000698851Re-query CCDS DB by Protein ID:ENSP00000513983
Original member Current member NCBI NM_001395587.1 NP_001382516.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395587.1Link to Protein Sequence:NP_001382516.1Re-query CCDS DB by Nucleotide ID:NM_001395587Re-query CCDS DB by Protein ID:NP_001382516Link to BLAST:NP_001382516.1

Chromosomal Locations for CCDS 94706.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 5057100 5057459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5098215 5100707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5501057 5501255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5581775 5581798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5737272 5737942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3747 nt):
ATGCAGTTCAAGCTAGTGTACAAGACCGGAGATGTGCCACTGATTCGAATTGAAGAGGATACTGGTGAGA
TCTTCACTACCGGCGCTCGCATTGATCGTGAGAAATTATGTGCTGGTATCCCAAGGGATGAGCATTGCTT
TTATGAAGTGGAGGTTGCCATTTTGCCGGATGAAATATTTAGACTGGTTAAGATACGTTTTCTGATAGAA
GATATAAATGATAATGCACCATTGTTCCCAGCAACAGTTATCAACATATCAATTCCAGAGAACTCGGCTA
TAAACTCTAAATATACTCTCCCAGCGGCTGTTGATCCTGACGTAGGCATAAACGGAGTTCAAAACTACGA
ACTAATTAAGAGTCAAAACATTTTTGGCCTCGATGTCATTGAAACACCAGAAGGAGACAAGATGCCACAA
CTGATTGTTCAAAAGGAGTTAGATAGGGAAGAGAAGGATACCTATGTGATGAAAGTAAAGGTTGAAGATG
GTGGCTTTCCTCAAAGATCCAGTACTGCTATTTTGCAAGTAAGTGTTACTGATACAAATGACAACCACCC
AGTCTTTAAGGAGACAGAGATTGAAGTCAGTATACCAGAAAATGCTCCTGTAGGCACTTCAGTGACACAG
CTCCATGCCACAGATGCTGACATAGGTGAAAATGCCAAGATCCACTTCTCTTTCAGCAATCTAGTCTCCA
ACATTGCCAGGAGATTATTTCACCTCAATGCCACCACTGGACTTATCACAATCAAAGAACCACTGGATAG
GGAAGAAACACCAAACCACAAGTTACTGGTTTTGGCAAGTGATGGTGGATTGATGCCAGCAAGAGCAATG
GTGCTGGTAAATGTTACAGATGTCAATGATAATGTCCCATCCATTGACATAAGATACATCGTCAATCCTG
TCAATGACACAGTTGTTCTTTCAGAAAATATTCCACTCAACACCAAAATTGCTCTCATAACTGTGACGGA
TAAGGATGCGGACCATAATGGCAGGGTGACATGCTTCACAGATCATGAAATTCCTTTCAGATTAAGGCCA
GTATTCAGTAATCAGTTCCTCCTGGAGAATGCAGCATATCTTGACTATGAGTCCACAAAAGAATATGCCA
TTAAATTACTGGCTGCAGATGCTGGCAAACCTCCTTTGAATCAGTCAGCAATGCTCTTCATCAAAGTGAA
AGATGAAAATGACAATGCTCCAGTTTTCACCCAGTCTTTCGTAACTGTTTCTATTCCTGAGAATAACTCT
CCTGGCATCCAGTTGATGAAAGTAAGTGCAACGGATGCAGACAGTGGGCCTAATGCTGAGATCAATTACC
TGCTAGGCCCTGATGCTCCACCTGAATTCAGCCTGGATCGTCGTACAGGCATGCTGACTGTAGTGAAGAA
ACTAGATAGAGAAAAAGAGGATAAATATTTATTCACAATTCTGGCAAAAGATAATGGGGTACCACCCTTA
ACCAGCAATGTCACAGTCTTTGTAAGCATTATTGATCAGAATGACAATAGCCCAGTTTTCACTCACAATG
AATACAAATTCTATGTCCCAGAAAACCTTCCAAGGCATGGTACAGTAGGACTAATCACTGTAACTGATCC
TGATTATGGAGACAATTCTGCAGTTACGCTCTCCATTTTAGATGAGAATGATGACTTCACCATTGATTCA
CAAACTGGTGTCATCCGACCAAATATTTCATTTGATAGAGAAAAACAAGAATCTTACACTTTCTATGTAA
AGGCTGAGGATGGTGGTAGAGTATCACGTTCTTCAAGTGCCAAAGTAACCATAAATGTGGTTGATGTCAA
TGACAACAAACCAGTTTTCATTGTCCCTCCTTACAACTATTCTTATGAATTGGTTCTACCGTCCACTAAT
CCAGGCACAGTGGTCTTTCAGGTAATTGCTGTTGACAATGACACTGGCATGAATGCAGAGGTTCGTTACA
GCATTGTAGGAGGAAACACAAGAGATCTGTTTGCAATCGACCAAGAAACAGGCAACATAACATTGATGGA
GAAATGTGATGTTACAGACCTTGGTTTACACAGAGTGTTGGTCAAAGCTAATGACTTAGGACAGCCTGAT
TCTCTCTTCAGTGTTGTAATTGTCAATCTGTTCGTGAATGAGTCAGTGACCAATGCTACACTGATTAATG
AACTGGTGCGCAAAAGCATTGAAGCACCAGTGACCCCAAATACTGAGATAGCTGATGTATCCTCACCAAC
TAGTGACTATGTCAAGATCCTGGTTGCAGCTGTTGCTGGCACCATAACTGTCGTTGTAGTTATTTTCATC
ACTGCTGTAGTAAGATGTCGCCAGGCACCACACCTTAAGGCTGCTCAGAAAAACATGCAGAATTCTGAAT
GGGCTACCCCAAACCCAGAAAACAGGCAGATGATAATGATGAAGAAAAAGAAAAAGAAGAAGAAGCATTC
CCCTAAGAACCTGCTGCTTAATGTTGTCACTATTGAAGAAACTAAGGCAGATGATGTTGACAGTGATGGA
AACAGAGTCACACTAGACCTTCCTATTGATCTAGAAGAGCAAACAATGGGAAAGTACAATTGGGTAACTA
CACCTACTACTTTCAAGCCTGACAGCCCTGATTTGGCCCGACACTACAAATCTGCCTCTCCACAGCCTGC
CTTCCAAATTCAGCCTGAAACTCCCCTGAATTTGAAGCACCACATCATCCAAGAACTGCCTCTCGATAAC
ACCTTTGTGGCCTGTGACTCTATCTCCAATTGTTCCTCAAGCAGTTCAGATCCCTACAGCGTTTCTGACT
GTGGCTATCCAGTGACAACCTTCGAGGTACCTGTGTCCGTACACACCAGACCGTCCCAGCGGCGTGTCAC
ATTTCACCTGCCAGAAGGCTCTCAGGAAAGCAGCAGTGATGGTGGACTGGGAGACCATGATGCAGGCAGC
CTTACCAGCACATCCCATGGCCTGCCCCTTGGCTATCCTCAGGAGGAGTACTTTGATCGTGCTACACCCA
GCAATCGCACTGAAGGGGATGGCAACTCCGATCCTGAATCTACTTTCATACCTGGACTAAAGAAAGAAAT
AACTGTTCAACCAACTGTGGAAGAGGCCTCTGACAACTGCACTCAAGAATGTCTCATCTATGGCCATTCT
GATGCCTGCTGGATGCCGGCATCTCTGGATCATTCCAGCTCTTCACAAGCACAGGCCTCTGCTCTATGCC
ACAGCCCACCACTGTCACAGGCCTCTACTCAGCACCACAGCCCACCAGTGACACAGACCATTGTTCTCTG
CCACAGCCCTCCAGTGACACAGACCATCGCATTGTGCCACAGCCCACCACCGATACAGGTGTCTGCTCTC
CACCACAGTCCTCCTCTAGTGCAGGGTACTGCACTTCACCACAGCCCACCATCAGCACAGGCCTCAGCCC
TCTGCTACAGCCCTCCTTTAGCACAGGCTGCTGCAATCAGCCACAGCTCTTCTCTGCCACAGGTTATTGC
CCTCCATCGTAGTCAGGCCCAATCATCAGTCAGTTTGCAGCAAGGTTGGGTGCAAGGTGCTAATGGACTA
TGCTCTGTTGATCAGGGAGTGCAAGGTAGTGCAACATCTCAGTTTTACACCATGTCTGAAAGACTTCATC
CCAGTGATGATTCAATTAAAGTCATTCCTTTGACAACCTTCGCTCCACGCCAACAGGCCAGACCGTCCAG
AGGTGATTCCCCCATTATGGAAACACATCCCTTGTAA

Translation (1248 aa):
MQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIE
DINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQ
LIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQ
LHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAM
VLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRP
VFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNS
PGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPL
TSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDS
QTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTN
PGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPD
SLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFI
TAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDVDSDG
NRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDN
TFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGS
LTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYGHS
DACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIALCHSPPPIQVSAL
HHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIALHRSQAQSSVSLQQGWVQGANGL
CSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFAPRQQARPSRGDSPIMETHPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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