NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS94210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94210.1 Public Homo sapiens 7 SLC13A4 24 110 108 CCDS HistoryNCBI Gene:26266Re-query CCDS DB by CCDS ID:94210.1Re-query CCDS DB by GeneID:26266See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94210.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000682651.1 ENSP00000508027.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682651.1Link to Ensembl Protein Viewer:ENSP00000508027.1Re-query CCDS DB by Nucleotide ID:ENST00000682651Re-query CCDS DB by Protein ID:ENSP00000508027
Original member Current member NCBI NM_001318192.2 NP_001305121.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318192.2Link to Protein Sequence:NP_001305121.1Re-query CCDS DB by Nucleotide ID:NM_001318192Re-query CCDS DB by Protein ID:NP_001305121Link to BLAST:NP_001305121.1

Chromosomal Locations for CCDS 94210.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 135681563 135681700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135684124 135684261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135685522 135685683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135691201 135691325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135691548 135691645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135692323 135692424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135694137 135694238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135695368 135695487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135699364 135699548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135701680 135701760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135702845 135702884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135705596 135705650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135706128 135706300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135708114 135708250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135721395 135721523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135727398 135727496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGGGCCTGCTGCAGGGCCTGCTCCGAGTCCGGAAGCTGCTGCTGGTCGTCTGCGTCCCGCTCCTGCTGC
TGCCTCTGCCCGTCCTCCACCCCAGCAGCGAGGCCTCGTGTGCTTACGTGCTGATCGTGACTGCTGTGTA
CTGGGTGTCGGAGGCAGTGCCTCTGGGAGCTGCAGCCCTGGTGCCGGCCTTCCTTTACCCGTTCTTCGGA
GTCCTCCGGTCCAATGAGGTGGCGGCGGAGTACTTCAAGAACACCACGCTGCTGCTGGTGGGGGTCATCT
GCGTGGCGGCTGCCGTGGAGAAGTGGAACCTGCATAAGCGCATTGCTCTGCGCATGGTCTTGATGGCCGG
AGCCAAGCCGGGCATGCTGCTGCTCTGCTTCATGTGCTGTACCACGTTGCTGTCCATGTGGCTGTCCAAC
ACCTCCACCACCGCCATGGTGATGCCCATCGTGGAGGCCGTGCTGCAGGAGCTGGTCAGTGCTGAGGACG
AGCAGCTCGTGGCGGGCAACTCCAACACCGAAGAGGCCGAACCCATCAGTCTGGATGTAAAGAACAGCCA
ACCTTCTCTGGAACTCATCTTTGTCAATGAAGACAGGTCCAACGCAGACCTCACCACTCTGATGCACAAC
GAGAACCTGAATGGTGTGCCCTCGATCACCAACCCCATCAAAACTGCAAACCAACACCAGGGCAAGAAGC
AACACCCATCCCAGGAAAAGCCACAAGTCCTGACCCCCAGCCCCAGGAAGCAGAAGCTGAACAGAAAGTA
CAGGTCCCACCATGACCAGATGATCTGCAAGTGCCTCTCCCTGAGCATATCCTACTCCGCTACCATTGGC
GGCCTGACCACCATCATCGGCACCTCCACCAGCCTCATCTTCCTGGAACACTTCAACAACCAGTATCCAG
CCGCAGAGGTGGTGAACTTTGGCACCTGGTTCCTCTTCAGCTTCCCCATATCCCTCATCATGCTGGTGGT
CAGCTGGTTCTGGATGCACTGGCTGTTCCTGGGCTGCAATTTTAAAGAGACCTGCTCTCTGAGCAAGAAG
AAGAAGACCAAAAGGGAACAGTTGTCAGAGAAGAGGATCCAAGAAGAATATGAAAAACTGGGAGACATTA
GCTACCCAGAAATGGTGACTGGATTTTTCTTCATCCTGATGACCGTACTGTGGTTTACCCGGGAGCCTGG
CTTTGTCCCTGGCTGGGATTCTTTCTTTGAAAAGAAAGGCTACCGTACTGATGCCACAGTCTCTGTCTTC
CTTGGCTTCCTCCTCTTCCTCATTCCAGCGAAGAAGCCCTGCTTTGGGAAAAAGAATGATGGAGAGAACC
AGGAGCACTCACTGGGGACCGAGCCCATCATCACGTGGAAGGACTTCCAGAAGACCATGCCCTGGGAGAT
TGTCATTCTGGTTGGGGGAGGCTATGCTCTGGCTTCTGGTAGCAAGAGCTCTGGCCTCTCTACATGGATT
GGGAACCAGATGTTGTCCCTGAGCAGCCTCCCACCGTGGGCTGTCACCCTGCTGGCATGCATCCTCGTGT
CCATTGTCACTGAGTTTGTGAGCAACCCAGCAACCATCACCATCTTCCTGCCCATCCTGTGCAGCCTGTC
TGAAACGCTGCACATTAACCCCCTCTACACCCTGATCCCAGTCACCATGTGCATCTCCTTTGCAGTGATG
CTGCCTGTGGGCAATCCCCCTAATGCCATCGTCTTCAGCTATGGGCACTGCCAGATCAAAGATATGGTGA
AAGCTGGCCTGGGAGTCAACGTTATTGGACTGGTGATAGTAATGGTGGCCATCAACACCTGGGGAGTTAG
CCTCTTCCACCTGGACACTTACCCAGCATGGGCGAGGGTCAGCAACATCACTGATCAAGCCTAA

Translation (627 aa):
MGLLQGLLRVRKLLLVVCVPLLLLPLPVLHPSSEASCAYVLIVTAVYWVSEAVPLGAAALVPAFLYPFFG
VLRSNEVAAEYFKNTTLLLVGVICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTLLSMWLSN
TSTTAMVMPIVEAVLQELVSAEDEQLVAGNSNTEEAEPISLDVKNSQPSLELIFVNEDRSNADLTTLMHN
ENLNGVPSITNPIKTANQHQGKKQHPSQEKPQVLTPSPRKQKLNRKYRSHHDQMICKCLSLSISYSATIG
GLTTIIGTSTSLIFLEHFNNQYPAAEVVNFGTWFLFSFPISLIMLVVSWFWMHWLFLGCNFKETCSLSKK
KKTKREQLSEKRIQEEYEKLGDISYPEMVTGFFFILMTVLWFTREPGFVPGWDSFFEKKGYRTDATVSVF
LGFLLFLIPAKKPCFGKKNDGENQEHSLGTEPIITWKDFQKTMPWEIVILVGGGYALASGSKSSGLSTWI
GNQMLSLSSLPPWAVTLLACILVSIVTEFVSNPATITIFLPILCSLSETLHINPLYTLIPVTMCISFAVM
LPVGNPPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMVAINTWGVSLFHLDTYPAWARVSNITDQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH