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Report for CCDS53404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53404.1 Public Homo sapiens 1 NDUFS2 24 110 108 CCDS HistoryNCBI Gene:4720Re-query CCDS DB by CCDS ID:53404.1Re-query CCDS DB by GeneID:4720See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392179.5 ENSP00000376018.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392179.5Link to Ensembl Protein Viewer:ENSP00000376018.4Re-query CCDS DB by Nucleotide ID:ENST00000392179Re-query CCDS DB by Protein ID:ENSP00000376018
Original member Current member EBI ENST00000677457.1 ENSP00000503294.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677457.1Link to Ensembl Protein Viewer:ENSP00000503294.1Re-query CCDS DB by Nucleotide ID:ENST00000677457Re-query CCDS DB by Protein ID:ENSP00000503294
Original member Current member EBI ENST00000677550.1 ENSP00000503353.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677550.1Link to Ensembl Protein Viewer:ENSP00000503353.1Re-query CCDS DB by Nucleotide ID:ENST00000677550Re-query CCDS DB by Protein ID:ENSP00000503353
Original member Current member EBI ENST00000678605.1 ENSP00000503969.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678605.1Link to Ensembl Protein Viewer:ENSP00000503969.1Re-query CCDS DB by Nucleotide ID:ENST00000678605Re-query CCDS DB by Protein ID:ENSP00000503969
Original member Current member EBI ENST00000679176.1 ENSP00000504170.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679176.1Link to Ensembl Protein Viewer:ENSP00000504170.1Re-query CCDS DB by Nucleotide ID:ENST00000679176Re-query CCDS DB by Protein ID:ENSP00000504170
Original member Current member NCBI NM_001166159.2 NP_001159631.1 Accepted alive Link to Nucleotide Sequence:NM_001166159.2Link to Protein Sequence:NP_001159631.1Re-query CCDS DB by Nucleotide ID:NM_001166159Re-query CCDS DB by Protein ID:NP_001159631Link to BLAST:NP_001159631.1
Original member Current member NCBI NM_001377300.1 NP_001364229.1 Accepted alive Link to Nucleotide Sequence:NM_001377300.1Link to Protein Sequence:NP_001364229.1Re-query CCDS DB by Nucleotide ID:NM_001377300Re-query CCDS DB by Protein ID:NP_001364229Link to BLAST:NP_001364229.1
Original member Current member NCBI NM_001377301.1 NP_001364230.1 Accepted alive Link to Nucleotide Sequence:NM_001377301.1Link to Protein Sequence:NP_001364230.1Re-query CCDS DB by Nucleotide ID:NM_001377301Re-query CCDS DB by Protein ID:NP_001364230Link to BLAST:NP_001364230.1
Original member Current member NCBI NM_001377302.1 NP_001364231.1 Accepted alive Link to Nucleotide Sequence:NM_001377302.1Link to Protein Sequence:NP_001364231.1Re-query CCDS DB by Nucleotide ID:NM_001377302Re-query CCDS DB by Protein ID:NP_001364231Link to BLAST:NP_001364231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159631.1 457 O75306-2 457 100% 0 0
NP_001364229.1 457 O75306-2 457 100% 0 0
NP_001364230.1 457 O75306-2 457 100% 0 0
NP_001364231.1 457 O75306-2 457 100% 0 0

Chromosomal Locations for CCDS 53404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161202386 161202480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161203437 161203543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161206407 161206597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161209193 161209313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161209483 161209595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161209857 161209931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161210111 161210188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161210304 161210389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161210591 161210710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161212351 161212480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161213380 161213475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161213649 161213732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161213864 161213941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGCGGCGCTGAGGGCTTTGTGCGGCTTCCGGGGCGTCGCGGCCCAGGTGCTGCGGCCTGGGGCTGGAG
TCCGATTGCCGATTCAGCCCAGCAGAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAGCAGTT
TGGGGGAGCTGTTATGTACCCAAGCAAAGAAACAGCCCACTGGAAGCCTCCACCTTGGAATGATGTGGAC
CCTCCAAAGGACACAATTGTGAAGAACATTACCCTGAACTTTGGGCCCCAACACCCAGCAGCGCATGGTG
TCCTGCGACTAGTGATGGAATTGAGTGGGGAGATGGTGCGGAAGTGTGATCCTCACATCGGGCTCCTGCA
CCGAGGCACTGAGAAGCTCATTGAATACAAGACCTATCTTCAGGCCCTTCCATACTTTGACCGGCTAGAC
TATGTGTCCATGATGTGTAACGAACAGGCCTATTCTCTAGCTGTGGAGAAGTTGCTAAACATCCGGCCTC
CTCCTCGGGCACAGTGGATCCGAGTGCTGTTTGGAGAAATCACACGTTTGTTGAACCACATCATGGCTGT
GACCACACATGCCCTGGACCTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAGGGAGAAGATG
TTTGAGTTCTACGAGCGAGTGTCTGGAGCCCGAATGCATGCTGCTTATATCCGGCCAGGAGGAGTGCACC
AGGACCTACCCCTTGGGCTTATGGATGACATTTATCAGTTTTCTAAGAACTTCTCTCTTCGGCTTGATGA
GTTGGAGGAGTTGCTGACCAACAATAGGATCTGGCGAAATCGGACAATTGACATTGGGGTTGTAACAGCA
GAAGAAGCACTTAACTATGGTTTTAGTGGAGTGATGCTTCGGGGCTCAGGCATCCAGTGGGACCTGCGGA
AGACCCAGCCCTATGATGTTTACGACCAGGTTGAGTTTGATGTTCCTGTTGGTTCTCGAGGGGACTGCTA
TGATAGGTACCTGTGCCGGGTGGAGGAGATGCGCCAGTCCCTGAGAATTATCGCACAGTGTCTAAACAAG
ATGCCTCCTGGGGAGATCAAGGTTGATGATGCCAAAGTGTCTCCACCTAAGCGAGCAGAGATGAAGACTT
CCATGGAGTCACTGATTCATCACTTTAAGTTGTATACTGAGGGCTACCAAGTTCCTCCAGGAGCCACATA
TACTGCCATTGAGGCTCCCAAGGGAGAGTTTGGGGTGTACCTGGTGTCTGATGGCAGCAGCCGCCCTTAT
CGATGCAAGATCAAGGCTCCTGGTTTTGCCCATCTGGCTGGTTTGGACAAGATGTCTAAGGGACACATGT
TGGCAGATGTCGTTGCCATCATAGGTACGAGGCCTATTGTGTAG

Translation (457 aa):
MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAHWKPPPWNDVD
PPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLD
YVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKM
FEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTA
EEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNK
MPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRPIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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