NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS75948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75948.1 Public Homo sapiens X ARSL 24 110 108 CCDS HistoryNCBI Gene:415Re-query CCDS DB by CCDS ID:75948.1Re-query CCDS DB by GeneID:415See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75948.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000545496.6 ENSP00000441417.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545496.6Link to Ensembl Protein Viewer:ENSP00000441417.1Re-query CCDS DB by Nucleotide ID:ENST00000545496Re-query CCDS DB by Protein ID:ENSP00000441417
Original member Current member EBI ENST00000672027.1 ENSP00000500220.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672027.1Link to Ensembl Protein Viewer:ENSP00000500220.1Re-query CCDS DB by Nucleotide ID:ENST00000672027Re-query CCDS DB by Protein ID:ENSP00000500220
Original member Current member EBI ENST00000681963.1 ENSP00000507760.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681963.1Link to Ensembl Protein Viewer:ENSP00000507760.1Re-query CCDS DB by Nucleotide ID:ENST00000681963Re-query CCDS DB by Protein ID:ENSP00000507760
Original member Current member EBI ENST00000683290.1 ENSP00000508156.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683290.1Link to Ensembl Protein Viewer:ENSP00000508156.1Re-query CCDS DB by Nucleotide ID:ENST00000683290Re-query CCDS DB by Protein ID:ENSP00000508156
Original member Current member NCBI NM_001282628.2 NP_001269557.1 Accepted alive Link to Nucleotide Sequence:NM_001282628.2Link to Protein Sequence:NP_001269557.1Re-query CCDS DB by Nucleotide ID:NM_001282628Re-query CCDS DB by Protein ID:NP_001269557Link to BLAST:NP_001269557.1
Original member Current member NCBI NM_001369080.1 NP_001356009.1 Accepted alive Link to Nucleotide Sequence:NM_001369080.1Link to Protein Sequence:NP_001356009.1Re-query CCDS DB by Nucleotide ID:NM_001369080Re-query CCDS DB by Protein ID:NP_001356009Link to BLAST:NP_001356009.1

Chromosomal Locations for CCDS 75948.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 2934832 2935190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2936742 2936863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2938095 2938257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2943065 2943199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2945998 2946134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2949304 2949727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2953143 2953265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2955416 2955537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2958274 2958435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2959603 2959700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGAGACCCGTGATTAATAGATGTGCTCCAGGCTCCCTTGATTTGATGTTGCCCCAGGCAGCCTCAGAAG
GAATTGTATTTCATTCTCTGCAAATCAGTTTGTGTTTCAGGAGCTGGCTGCCAGCGATGCTCGCTGTACT
GCTAAGTTTGGCACCATCAGCTTCCAGCGACATTTCCGCCTCCCGACCGAACATCCTTCTTCTGATGGCG
GACGACCTTGGCATTGGGGACATTGGCTGCTATGGCAACAACACCATGAGGACTCCGAATATTGACCGCC
TTGCAGAGGACGGCGTGAAGCTGACCCAACACATCTCTGCCGCATCTTTGTGCACCCCAAGCAGAGCCGC
CTTCCTCACGGGCAGATACCCTGTGCGATCAGGGATGGTTTCCAGCATTGGTTACCGTGTTCTTCAGTGG
ACCGGAGCATCTGGAGGTCTTCCAACAAATGAGACAACTTTTGCAAAAATACTGAAAGAGAAAGGCTATG
CCACTGGACTCATTGGAAAATGGCATCTGGGTCTCAACTGTGAGTCAGCCAGTGATCATTGCCACCACCC
TCTCCATCATGGCTTTGACCATTTCTACGGAATGCCTTTCTCCTTGATGGGTGATTGCGCCCGCTGGGAA
CTCTCAGAGAAGCGTGTCAACCTGGAACAAAAACTCAACTTCCTCTTCCAAGTCCTGGCCTTGGTTGCCC
TCACACTGGTAGCAGGGAAGCTCACACACCTGATACCCGTCTCGTGGATGCCGGTCATCTGGTCAGCCCT
TTCGGCCGTCCTCCTCCTCGCAAGCTCCTATTTTGTGGGTGCTCTGATTGTCCATGCCGATTGCTTTCTG
ATGAGAAACCACACCATCACGGAGCAGCCCATGTGCTTCCAAAGAACGACACCCCTTATTCTGCAGGAGG
TTGCGTCCTTTCTCAAAAGGAATAAGCATGGGCCTTTCCTCCTCTTTGTTTCCTTTCTACACGTTCACAT
CCCTCTTATCACTATGGAGAACTTCCTCGGGAAGAGTCTCCACGGGCTGTATGGGGACAACGTAGAGGAG
ATGGACTGGATGGTAGGACGGATCCTTGACACTTTGGACGTGGAGGGTTTGAGCAACAGCACCCTCATTT
ATTTTACGTCGGATCACGGCGGTTCCCTAGAGAATCAACTTGGAAACACCCAGTATGGTGGCTGGAATGG
AATTTATAAAGGTGGGAAGGGCATGGGAGGATGGGAAGGTGGGATCCGCGTGCCCGGGATCTTCCGCTGG
CCCGGGGTGCTCCCGGCCGGCCGAGTGATTGGCGAGCCCACGAGTCTGATGGACGTGTTCCCCACCGTGG
TCCGGCTGGCGGGCGGCGAGGTGCCCCAGGACAGAGTGATTGACGGCCAAGACCTTCTGCCCTTGCTCCT
GGGGACAGCCCAACACTCAGACCACGAGTTCCTGATGCATTATTGTGAGAGGTTTCTGCACGCAGCCAGG
TGGCATCAACGGGACAGAGGAACAATGTGGAAAGTCCACTTTGTGACGCCTGTGTTCCAGCCAGAGGGAG
CCGGTGCCTGCTATGGAAGAAAGGTCTGCCCGTGCTTTGGGGAAAAAGTAGTCCACCACGATCCACCTTT
GCTCTTTGACCTCTCAAGAGACCCTTCTGAGACCCACATCCTCACACCAGCCTCAGAGCCCGTGTTCTAT
CAGGTGATGGAACGAGTCCAGCAGGCGGTGTGGGAACACCAGCGGACACTCAGCCCAGTTCCTCTGCAGC
TGGACAGGCTGGGCAACATCTGGAGACCGTGGCTGCAGCCCTGCTGTGGCCCGTTCCCCCTCTGCTGGTG
CCTTAGGGAAGATGACCCACAATAA

Translation (614 aa):
MRPVINRCAPGSLDLMLPQAASEGIVFHSLQISLCFRSWLPAMLAVLLSLAPSASSDISASRPNILLLMA
DDLGIGDIGCYGNNTMRTPNIDRLAEDGVKLTQHISAASLCTPSRAAFLTGRYPVRSGMVSSIGYRVLQW
TGASGGLPTNETTFAKILKEKGYATGLIGKWHLGLNCESASDHCHHPLHHGFDHFYGMPFSLMGDCARWE
LSEKRVNLEQKLNFLFQVLALVALTLVAGKLTHLIPVSWMPVIWSALSAVLLLASSYFVGALIVHADCFL
MRNHTITEQPMCFQRTTPLILQEVASFLKRNKHGPFLLFVSFLHVHIPLITMENFLGKSLHGLYGDNVEE
MDWMVGRILDTLDVEGLSNSTLIYFTSDHGGSLENQLGNTQYGGWNGIYKGGKGMGGWEGGIRVPGIFRW
PGVLPAGRVIGEPTSLMDVFPTVVRLAGGEVPQDRVIDGQDLLPLLLGTAQHSDHEFLMHYCERFLHAAR
WHQRDRGTMWKVHFVTPVFQPEGAGACYGRKVCPCFGEKVVHHDPPLLFDLSRDPSETHILTPASEPVFY
QVMERVQQAVWEHQRTLSPVPLQLDRLGNIWRPWLQPCCGPFPLCWCLREDDPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH