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Report for CCDS81953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81953.1 Public Homo sapiens 16 CLEC19A 24 110 108 CCDS HistoryNCBI Gene:728276Re-query CCDS DB by CCDS ID:81953.1Re-query CCDS DB by GeneID:728276See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 81953.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000636231.2 ENSP00000490375.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000636231.2Link to Ensembl Protein Viewer:ENSP00000490375.1Re-query CCDS DB by Nucleotide ID:ENST00000636231Re-query CCDS DB by Protein ID:ENSP00000490375
Original member Current member NCBI NM_001256720.2 NP_001243649.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001256720.2Link to Protein Sequence:NP_001243649.1Re-query CCDS DB by Nucleotide ID:NM_001256720Re-query CCDS DB by Protein ID:NP_001243649Link to BLAST:NP_001243649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243649.1 186 Q6UXS0-1 186 100% 0 0

Chromosomal Locations for CCDS 81953.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19285852 19285939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19298673 19298838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19304062 19304155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19307545 19307677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19309004 19309083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGCAAAGGTGGACACTGTGGGCTGCAGCCTTCCTGACCCTCCACTCTGCACAGGCCTTTCCACAAACAG
ACATCAGTATCAGTCCAGCCCTGCCAGAGCTGCCCCTGCCTTCCCTGTGCCCCCTGTTCTGGATGGAGTT
CAAAGGCCACTGCTATCGATTCTTCCCTCTCAATAAGACCTGGGCTGAGGCCGACCTCTACTGTTCTGAG
TTCTCTGTGGGCAGGAAGTCCGCCAAGCTGGCCTCCATCCACAGCTGGGAGGAGAATGTCTTTGTATATG
ACCTCGTGAACAGCTGTGTTCCCGGCATCCCAGCTGACGTCTGGACAGGCCTTCATGATCACAGACAGGA
AGGGCAGTTTGAATGGACTGATGGCTCATCCTATGACTACAGCTACTGGGATGGCAGCCAGCCAGATGAT
GGCGTCCACGCGGACCCAGAAGAAGAGGACTGCGTGCAGATATGGTACAGGCCTACCAGTGCTCTGAGGT
CATGGAATGATAACACCTGCAGCCGGAAGTTCCCCTTTGTCTGCAAAATCCCATCTCTGACCATTCATTG
A

Translation (186 aa):
MQRWTLWAAAFLTLHSAQAFPQTDISISPALPELPLPSLCPLFWMEFKGHCYRFFPLNKTWAEADLYCSE
FSVGRKSAKLASIHSWEENVFVYDLVNSCVPGIPADVWTGLHDHRQEGQFEWTDGSSYDYSYWDGSQPDD
GVHADPEEEDCVQIWYRPTSALRSWNDNTCSRKFPFVCKIPSLTIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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