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Report for CCDS11761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11761.1 Public Homo sapiens 17 C1QTNF1 24 110 108 CCDS HistoryNCBI Gene:114897Re-query CCDS DB by CCDS ID:11761.1Re-query CCDS DB by GeneID:114897See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11761.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339142.6 ENSP00000340864.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339142.6Link to Ensembl Protein Viewer:ENSP00000340864.2Re-query CCDS DB by Nucleotide ID:ENST00000339142Re-query CCDS DB by Protein ID:ENSP00000340864
Original member Current member EBI ENST00000354124.7 ENSP00000343230.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354124.7Link to Ensembl Protein Viewer:ENSP00000343230.4Re-query CCDS DB by Nucleotide ID:ENST00000354124Re-query CCDS DB by Protein ID:ENSP00000343230
Original member Current member EBI ENST00000392445.6 ENSP00000376240.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392445.6Link to Ensembl Protein Viewer:ENSP00000376240.2Re-query CCDS DB by Nucleotide ID:ENST00000392445Re-query CCDS DB by Protein ID:ENSP00000376240
Original member Current member EBI ENST00000581774.5 ENSP00000462481.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000581774.5Link to Ensembl Protein Viewer:ENSP00000462481.2Re-query CCDS DB by Nucleotide ID:ENST00000581774Re-query CCDS DB by Protein ID:ENSP00000462481
Original member Current member EBI ENST00000580454.5 ENSP00000462990.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580454.5Link to Ensembl Protein Viewer:ENSP00000462990.1Re-query CCDS DB by Nucleotide ID:ENST00000580454Re-query CCDS DB by Protein ID:ENSP00000462990
Original member Current member EBI ENST00000583904.5 ENSP00000463008.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000583904.5Link to Ensembl Protein Viewer:ENSP00000463008.1Re-query CCDS DB by Nucleotide ID:ENST00000583904Re-query CCDS DB by Protein ID:ENSP00000463008
Original member Current member EBI ENST00000580474.1 ENSP00000463108.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580474.1Link to Ensembl Protein Viewer:ENSP00000463108.1Re-query CCDS DB by Nucleotide ID:ENST00000580474Re-query CCDS DB by Protein ID:ENSP00000463108
Original member Current member EBI ENST00000579760.6 ENSP00000463922.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000579760.6Link to Ensembl Protein Viewer:ENSP00000463922.1Re-query CCDS DB by Nucleotide ID:ENST00000579760Re-query CCDS DB by Protein ID:ENSP00000463922
Original member Current member NCBI NM_030968.5 NP_112230.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030968.5Link to Protein Sequence:NP_112230.1Re-query CCDS DB by Nucleotide ID:NM_030968Re-query CCDS DB by Protein ID:NP_112230Link to BLAST:NP_112230.1
Original member Current member NCBI NM_153372.3 NP_699203.1 Accepted alive Link to Nucleotide Sequence:NM_153372.3Link to Protein Sequence:NP_699203.1Re-query CCDS DB by Nucleotide ID:NM_153372Re-query CCDS DB by Protein ID:NP_699203Link to BLAST:NP_699203.1
Original member Current member NCBI NM_198593.4 NP_940995.1 Accepted alive Link to Nucleotide Sequence:NM_198593.4Link to Protein Sequence:NP_940995.1Re-query CCDS DB by Nucleotide ID:NM_198593Re-query CCDS DB by Protein ID:NP_940995Link to BLAST:NP_940995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112230.1 281 Q9BXJ1-1 281 100% 0 0
NP_699203.1 281 Q9BXJ1-1 281 100% 0 0
NP_940995.1 281 Q9BXJ1-1 281 100% 0 0

Chromosomal Locations for CCDS 11761.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79043969 79044123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79046555 79046694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79047538 79048088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGGCTCCCGTGGACAGGGACTCTTGCTGGCGTACTGCCTGCTCCTTGCCTTTGCCTCTGGCCTGGTCC
TGAGTCGTGTGCCCCATGTCCAGGGGGAACAGCAGGAGTGGGAGGGGACTGAGGAGCTGCCGTCGCCTCC
GGACCATGCCGAGAGGGCTGAAGAACAACATGAAAAATACAGGCCCAGTCAGGACCAGGGGCTCCCTGCT
TCCCGGTGCTTGCGCTGCTGTGACCCCGGTACCTCCATGTACCCGGCGACCGCCGTGCCCCAGATCAACA
TCACTATCTTGAAAGGGGAGAAGGGTGACCGCGGAGATCGAGGCCTCCAAGGGAAATATGGCAAAACAGG
CTCAGCAGGGGCCAGGGGCCACACTGGACCCAAAGGGCAGAAGGGCTCCATGGGGGCCCCTGGGGAGCGG
TGCAAGAGCCACTACGCCGCCTTTTCGGTGGGCCGGAAGAAGCCCATGCACAGCAACCACTACTACCAGA
CGGTGATCTTCGACACGGAGTTCGTGAACCTCTACGACCACTTCAACATGTTCACCGGCAAGTTCTACTG
CTACGTGCCCGGCCTCTACTTCTTCAGCCTCAACGTGCACACCTGGAACCAGAAGGAGACCTACCTGCAC
ATCATGAAGAACGAGGAGGAGGTGGTGATCTTGTTCGCGCAGGTGGGCGACCGCAGCATCATGCAAAGCC
AGAGCCTGATGCTGGAGCTGCGAGAGCAGGACCAGGTGTGGGTACGCCTCTACAAGGGCGAACGTGAGAA
CGCCATCTTCAGCGAGGAGCTGGACACCTACATCACCTTCAGTGGCTACCTGGTCAAGCACGCCACCGAG
CCCTAG

Translation (281 aa):
MGSRGQGLLLAYCLLLAFASGLVLSRVPHVQGEQQEWEGTEELPSPPDHAERAEEQHEKYRPSQDQGLPA
SRCLRCCDPGTSMYPATAVPQINITILKGEKGDRGDRGLQGKYGKTGSAGARGHTGPKGQKGSMGAPGER
CKSHYAAFSVGRKKPMHSNHYYQTVIFDTEFVNLYDHFNMFTGKFYCYVPGLYFFSLNVHTWNQKETYLH
IMKNEEEVVILFAQVGDRSIMQSQSLMLELREQDQVWVRLYKGERENAIFSEELDTYITFSGYLVKHATE
P


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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