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Report for CCDS59117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59117.1 Public Homo sapiens 8 TMEM249 24 110 108 CCDS HistoryNCBI Gene:340393Re-query CCDS DB by CCDS ID:59117.1Re-query CCDS DB by GeneID:340393See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59117.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000565365.1 ENSP00000454468.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000565365.1Link to Ensembl Protein Viewer:ENSP00000454468.1Re-query CCDS DB by Nucleotide ID:ENST00000565365Re-query CCDS DB by Protein ID:ENSP00000454468
Original member Current member EBI ENST00000696146.1 ENSP00000512438.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000696146.1Link to Ensembl Protein Viewer:ENSP00000512438.1Re-query CCDS DB by Nucleotide ID:ENST00000696146Re-query CCDS DB by Protein ID:ENSP00000512438
Original member Current member NCBI NM_001252402.3 NP_001239331.1 Accepted alive Link to Nucleotide Sequence:NM_001252402.3Link to Protein Sequence:NP_001239331.1Re-query CCDS DB by Nucleotide ID:NM_001252402Re-query CCDS DB by Protein ID:NP_001239331Link to BLAST:NP_001239331.1
Original member Current member NCBI NM_001280561.2 NP_001267490.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001280561.2Link to Protein Sequence:NP_001267490.1Re-query CCDS DB by Nucleotide ID:NM_001280561Re-query CCDS DB by Protein ID:NP_001267490Link to BLAST:NP_001267490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239331.1 235 Q2WGJ8 235 100% 0 0
NP_001267490.1 235 Q2WGJ8 235 100% 0 0

Chromosomal Locations for CCDS 59117.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144353348 144353527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144353778 144353863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144353954 144354149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144354237 144354331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144354617 144354767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGCCTAAGGGCCGGGCCGGCAGCCTGCCCACGACCTCCATCGGCTGGCGCTTCCAGCTCTGGTTCCTAG
GACTCACCTGCCCGGAGCGCCACCTGGCCAGACGCCTCAAGAACAATAGCTTCTACCCATTCGTGCAGCA
GGAGCCAAACGTCTTCGTGCTCGAATACTACCTGGACACACTGTGGAAGGGGATGCTGCTCTTCATCATC
AGCGTGGTCCTGGTCAGCTTCAGCTCCCTGAGAGAGGTGCAGAAGCAAGAGACCTGGGTCTTCCTCGTGT
ACGGCGTGGGCGTGGGCCTGTGGCTCGTGATCTCGTCGCTGCCGCGGCGCCGCCTGGTGCTGAACCACAC
GCGCGGCGTGTACCACTTCTCCATCCAGGGCCGCACCGTGTGCCAGGGCCCCTTGCATCTGGTCTACGTG
CGCCTGGCGCTCAGCTCCGATGCCCACGGAAGGTGCTTCTTCCACCTGGTCCTCGGCGGCCACAGGTTGG
AGCCCCTGGTGCTGGTGCAGCTGTCGGAGCACTACGAGCAAATGGAATACTTGGGCCGTTACATCGCCCG
GAAACTCAACATCAACTACTTCGACTACCTGGCCACCTCCTACCGGCACGTGGTTCGCCACTGGCCACCC
CCTGGCGCTGGCACTGTGATGGGCAAGAGCCCCATGGGTCACAAGCCCAGCTCCTCTCAGTCCAGCCTGG
AGGTGTGA

Translation (235 aa):
MPKGRAGSLPTTSIGWRFQLWFLGLTCPERHLARRLKNNSFYPFVQQEPNVFVLEYYLDTLWKGMLLFII
SVVLVSFSSLREVQKQETWVFLVYGVGVGLWLVISSLPRRRLVLNHTRGVYHFSIQGRTVCQGPLHLVYV
RLALSSDAHGRCFFHLVLGGHRLEPLVLVQLSEHYEQMEYLGRYIARKLNINYFDYLATSYRHVVRHWPP
PGAGTVMGKSPMGHKPSSSQSSLEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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