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Report for CCDS58253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58253.1 Public Homo sapiens 12 RAP1B 24 110 108 CCDS HistoryNCBI Gene:5908Re-query CCDS DB by CCDS ID:58253.1Re-query CCDS DB by GeneID:5908See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58253.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540209.5 ENSP00000446318.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540209.5Link to Ensembl Protein Viewer:ENSP00000446318.1Re-query CCDS DB by Nucleotide ID:ENST00000540209Re-query CCDS DB by Protein ID:ENSP00000446318
Original member Current member NCBI NM_001251921.2 NP_001238850.1 Accepted alive Link to Nucleotide Sequence:NM_001251921.2Link to Protein Sequence:NP_001238850.1Re-query CCDS DB by Nucleotide ID:NM_001251921Re-query CCDS DB by Protein ID:NP_001238850Link to BLAST:NP_001238850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001238850.1 165 P61224-3 165 100% 0 0

Chromosomal Locations for CCDS 58253.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 68648725 68648781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68650400 68650468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68654112 68654252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68656306 68656449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68657101 68657187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGCGTGAGTATAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAGTCTGCTTTGACTGTACAATTTG
TTCAAGGAATTTTTGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAAAGGAGCAATTTACAGC
AATGAGGGATTTATACATGAAAAATGGACAAGGATTTGCATTAGTTTATTCCATCACAGCACAGTCCACA
TTTAACGATTTACAAGACCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGATGATGTTCCAATGATTC
TTGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGGAAGGAACAAGGTCAAAATCTAGCAAG
ACAATGGAACAACTGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTAT
GACCTAGTGCGGCAAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCTCGCAAAAAGTCATCATGTCAGC
TGCTTTAA

Translation (165 aa):
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKEQFTAMRDLYMKNGQGFALVYSITAQST
FNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFY
DLVRQINRKTPVPGKARKKSSCQLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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