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Report for CCDS54603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54603.1 Public Homo sapiens 3 ATXN7 24 110 108 CCDS HistoryNCBI Gene:6314Re-query CCDS DB by CCDS ID:54603.1Re-query CCDS DB by GeneID:6314See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54603.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000522345.2 ENSP00000428067.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522345.2Link to Ensembl Protein Viewer:ENSP00000428067.2Re-query CCDS DB by Nucleotide ID:ENST00000522345Re-query CCDS DB by Protein ID:ENSP00000428067
Original member Current member NCBI NM_001177387.1 NP_001170858.1 Accepted alive Link to Nucleotide Sequence:NM_001177387.1Link to Protein Sequence:NP_001170858.1Re-query CCDS DB by Nucleotide ID:NM_001177387Re-query CCDS DB by Protein ID:NP_001170858Link to BLAST:NP_001170858.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170858.1 945 O15265-2 945 100% 0 0

Chromosomal Locations for CCDS 54603.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 63912599 63912923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63913157 63913225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63952379 63952483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63979915 63980167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63982186 63982445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63982939 63983021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63988059 63988324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63990176 63990374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63990738 63990859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63995505 63996483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63997621 63997687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63999450 63999559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2838 nt):
ATGTCGGAGCGGGCCGCGGATGACGTCAGGGGGGAGCCGCGCCGCGCGGCGGCGGCGGCGGGCGGAGCAG
CGGCCGCGGCCGCCCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCTCCGCAGCCCCAGCG
GCAGCAGCACCCGCCACCGCCGCCACGGCGCACACGGCCGGAGGACGGCGGGCCCGGCGCCGCCTCCACC
TCGGCCGCCGCAATGGCGACGGTCGGGGAGCGCAGGCCTCTGCCCAGTCCTGAAGTGATGCTGGGACAGT
CGTGGAATCTGTGGGTTGAGGCTTCCAAACTTCCTGGGAAGGACGGGACAGAATTGGACGAAAGTTTCAA
GGAGTTTGGGAAAAACCGCGAAGTCATGGGGCTCTGTCGGGAAGACATGCCAATATTTGGTTTCTGTCCA
GCCCATGATGATTTCTACTTGGTGGTGTGTAACGACTGTAATCAGGTTGTCAAACCGCAGGCATTTCAAT
CACATTATGAAAGAAGACATAGCTCATCCAGCAAGCCGCCTTTGGCCGTTCCTCCCACTTCAGTATTTTC
CTTCTTCCCTTCTCTGTCCAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTTCCAGTGGAGGT
GTTCTTAGCGCATCCTCATCAAGTTCCAAGTTGTTGAAATCACCCAAAGAGAAACTGCAGCTCAGGGGGA
ACACCAGGCCAATGCATCCCATTCAGCAAAGTAGAGTTCCCCATGGTAGAATCATGACACCCTCTGTGAA
AGTGGAAAAGATTCATCCGAAAATGGATGGCACACTACTGAAATCTGCGGTGGGGCCAACCTGTCCTGCT
ACTGTGAGTTCCTTAGTCAAGCCTGGCCTTAACTGCCCCTCAATACCAAAGCCAACCTTGCCTTCACCTG
GACAGATTCTGAATGGCAAAGGGCTTCCTGCACCGCCCACTCTGGAAAAGAAACCTGAAGACAATTCCAA
TAATAGGAAATTTTTAAATAAGAGATTATCAGAAAGAGAGTTTGATCCTGACATCCACTGTGGGGTTATT
GATCTCGACACCAAGAAGCCCTGCACCCGGTCTTTGACATGCAAGACACATTCCTTAACCCAGCGCAGGG
CTGTCCAGGGTAGAAGAAAACGATTTGATGTGTTATTAGCCGAGCACAAAAACAAAACCAGGGAAAAGGA
ATTGATTCGCCATCCGGACTCTCAGCAACCACCGCAGCCTCTCAGGGACCCGCATCCCGCCCCTCCTAGA
ACGTCACAGGAGCCGCACCAAAACCCTCACGGAGTGATTCCTTCCGAATCAAAGCCTTTTGTAGCTAGTA
AACCTAAACCTCACACCCCCAGTCTTCCAAGGCCTCCAGGCTGCCCTGCTCAGCAAGGTGGGAGTGCCCC
CATTGACCCTCCTCCAGTCCATGAATCTCCACACCCTCCCCTGCCTGCCACTGAGCCAGCTTCTCGGTTA
TCCAGTGAGGAGGGCGAAGGCGATGACAAAGAAGAGTCTGTTGAAAAACTGGACTGTCATTATTCAGGTC
ATCATCCTCAGCCAGCATCTTTTTGCACATTTGGGAGCCGGCAGATAGGAAGAGGCTATTACGTGTTTGA
CTCCAGGTGGAATCGACTTCGCTGCGCCCTCAACCTCATGGTGGAGAAGCATCTGAATGCACAGCTATGG
AAGAAAATCCCACCAGTGCCCAGTACCACCTCACCCATCTCCACACGTATTCCTCACCGGACAAACTCTG
TGCCGACATCACAATGTGGAGTCAGCTATCTGGCAGCAGCCACCGTCTCTACATCCCCAGTCCTGCTCTC
ATCTACCTGCATCTCCCCAAATAGCAAATCGGTACCAGCTCATGGAACCACACTAAATGCACAGCCTGCT
GCTTCAGGGGCGATGGATCCTGTGTGCAGTATGCAATCCAGACAAGTGTCCTCTTCATCCTCATCCCCTT
CCACGCCCTCTGGCCTTTCCTCGGTTCCTTCCTCCCCCATGTCCAGGAAACCTCAGAAATTGAAATCCAG
CAAATCTTTGAGGCCCAAGGAGTCTTCTGGTAACAGCACTAACTGTCAAAATGCCAGTAGCAGTACCAGT
GGCGGCTCAGGAAAGAAACGCAAAAACAGTTCCCCACTGTTGGTTCACTCTTCCTCCTCCTCTTCCTCCT
CCTCCTCTTCTTCTCATTCCATGGAGTCTTTTAGGAAAAACTGTGTGGCTCACTCTGGGCCTCCCTACCC
CTCAACGGTAACATCTTCCCATAGCATCGGCCTCAACTGTGTGACGAATAAAGCAAATGCGGTGAACGTC
CGGCATGACCAGTCAGGGAGGGGCCCCCCCACCGGGAGCCCTGCTGAATCCATCAAGAGGATGAGTGTGA
TGGTGAACAGCAGTGATTCTACTCTTTCTCTTGGGCCATTCATTCACCAGTCCAATGAACTGCCTGTCAA
CTCCCACGGCAGTTTTTCCCACTCACACACTCCTCTAGACAAACTCATAGGAAAGAAAAGAAAGTGCTCA
CCCAGCTCGAGCAGCATCAACAACAGCAGCAGCAAACCCACAAAGGTTGCCAAAGTGCCAGCCGTGAACA
ATGTCCACATGAAACACACAGGCACCATCCCAGGGGCACAAGGACTGATGAACAGTTCCCTCCTTCATCA
GGATATCTCCTCACCTTGCTTACGAACAGGAATTTCAGCAACATCACCCCAGAGCCCTGACTTAAAATCC
AAAGGCACGTCCCTGACAGCTGAAAATAGCACGGGGAGGAATAATGCGGACACTTTTGAGGACAAGTTAC
ACCTCCACTCAGCACTCTGGACTCCACGATGCCTTTGA

Translation (945 aa):
MSERAADDVRGEPRRAAAAAGGAAAAAARQQQQQQQQQQPPPPQPQRQQHPPPPPRRTRPEDGGPGAAST
SAAAMATVGERRPLPSPEVMLGQSWNLWVEASKLPGKDGTELDESFKEFGKNREVMGLCREDMPIFGFCP
AHDDFYLVVCNDCNQVVKPQAFQSHYERRHSSSSKPPLAVPPTSVFSFFPSLSKSKGGSASGSNRSSSGG
VLSASSSSSKLLKSPKEKLQLRGNTRPMHPIQQSRVPHGRIMTPSVKVEKIHPKMDGTLLKSAVGPTCPA
TVSSLVKPGLNCPSIPKPTLPSPGQILNGKGLPAPPTLEKKPEDNSNNRKFLNKRLSEREFDPDIHCGVI
DLDTKKPCTRSLTCKTHSLTQRRAVQGRRKRFDVLLAEHKNKTREKELIRHPDSQQPPQPLRDPHPAPPR
TSQEPHQNPHGVIPSESKPFVASKPKPHTPSLPRPPGCPAQQGGSAPIDPPPVHESPHPPLPATEPASRL
SSEEGEGDDKEESVEKLDCHYSGHHPQPASFCTFGSRQIGRGYYVFDSRWNRLRCALNLMVEKHLNAQLW
KKIPPVPSTTSPISTRIPHRTNSVPTSQCGVSYLAAATVSTSPVLLSSTCISPNSKSVPAHGTTLNAQPA
ASGAMDPVCSMQSRQVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLRPKESSGNSTNCQNASSSTS
GGSGKKRKNSSPLLVHSSSSSSSSSSSSHSMESFRKNCVAHSGPPYPSTVTSSHSIGLNCVTNKANAVNV
RHDQSGRGPPTGSPAESIKRMSVMVNSSDSTLSLGPFIHQSNELPVNSHGSFSHSHTPLDKLIGKKRKCS
PSSSSINNSSSKPTKVAKVPAVNNVHMKHTGTIPGAQGLMNSSLLHQDISSPCLRTGISATSPQSPDLKS
KGTSLTAENSTGRNNADTFEDKLHLHSALWTPRCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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