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Report for CCDS34142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34142.1 Public Homo sapiens 5 RAI14 24 110 108 CCDS HistoryNCBI Gene:26064Re-query CCDS DB by CCDS ID:34142.1Re-query CCDS DB by GeneID:26064See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34142.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265109.8 ENSP00000265109.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265109.8Link to Ensembl Protein Viewer:ENSP00000265109.3Re-query CCDS DB by Nucleotide ID:ENST00000265109Re-query CCDS DB by Protein ID:ENSP00000265109
Original member Current member EBI ENST00000428746.6 ENSP00000388725.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428746.6Link to Ensembl Protein Viewer:ENSP00000388725.2Re-query CCDS DB by Nucleotide ID:ENST00000428746Re-query CCDS DB by Protein ID:ENSP00000388725
Original member Current member EBI ENST00000503673.5 ENSP00000422942.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503673.5Link to Ensembl Protein Viewer:ENSP00000422942.1Re-query CCDS DB by Nucleotide ID:ENST00000503673Re-query CCDS DB by Protein ID:ENSP00000422942
Original member Current member NCBI NM_001145520.1 NP_001138992.1 Accepted alive Link to Nucleotide Sequence:NM_001145520.1Link to Protein Sequence:NP_001138992.1Re-query CCDS DB by Nucleotide ID:NM_001145520Re-query CCDS DB by Protein ID:NP_001138992Link to BLAST:NP_001138992.1
Original member Current member NCBI NM_001145521.2 NP_001138993.1 Accepted alive Link to Nucleotide Sequence:NM_001145521.2Link to Protein Sequence:NP_001138993.1Re-query CCDS DB by Nucleotide ID:NM_001145521Re-query CCDS DB by Protein ID:NP_001138993Link to BLAST:NP_001138993.1
Original member Current member NCBI NM_015577.3 NP_056392.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015577.3Link to Protein Sequence:NP_056392.2Re-query CCDS DB by Nucleotide ID:NM_015577Re-query CCDS DB by Protein ID:NP_056392Link to BLAST:NP_056392.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138992.1 980 Q9P0K7-1 980 100% 0 0
NP_001138993.1 980 Q9P0K7-1 980 100% 0 0
NP_056392.2 980 Q9P0K7-1 980 100% 0 0

Chromosomal Locations for CCDS 34142.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34686920 34686955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34757468 34757598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34795939 34796027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34803712 34803776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34807800 34807857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34808584 34808654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34811012 34811118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34811767 34811945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34812180 34812208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34813574 34813660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34814583 34814669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34818797 34818851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34821732 34821850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34822956 34824491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34826330 34826479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34829732 34829797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34830688 34830765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2943 nt):
ATGAAGAGCTTGAAAGCGAAGTTCAGGAAGAGTGACACCAATGAGTGGAACAAGAATGATGACCGGCTAC
TGCAGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCAC
CAAACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAATGCCTCAGG
GTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATCTCGCAG
CCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAG
CTCTGGGAAAACAGCTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAA
CACAAGAGCCCCATAAACCTCAAAGATTTGGATGGGAATATACCGCTGCTTCTTGCTGTACAAAATGGTC
ACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGAACAAAAGTGGAAGAAC
TGCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGAC
CTAAACCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTC
AAAGCCTTCTATTATCAAAAATCTCTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGCATGA
CCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCACCTCCTATC
AGTCCTACCCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGGAAAGGAAT
CGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAG
TGACAGTACTACAGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCT
CTATTGCAAGCAAAAGTTGCTTCCCTTACCTTACACAATAAGGAGTTACAAGATAAATTACAGGCCAAAT
CACCCAAGGAGGCGGAAGCAGACCTAAGCTTTGACTCATACCATTCCACCCAAACTGACTTGGGCCCATC
CCTGGGAAAACCTGGTGAAACCTCTCCCCCAGACTCCAAATCATCTCCATCTGTCTTAATACATTCTTTA
GGTAAATCCACTACTGACAATGATGTCAGAATTCAGCAACTGCAAGAGATTTTGCAAGATCTACAGAAGA
GATTAGAGAGCTCTGAAGCAGAGAGAAAACAGCTACAGGTCGAACTCCAATCCCGAAGGGCAGAACTGGT
ATGCTTAAACAACACTGAGATTTCAGAGAACAGCTCTGACCTCAGCCAGAAACTTAAAGAAACTCAGAGC
AAATACGAGGAGGCTATGAAAGAAGTCCTTAGTGTGCAGAAGCAGATGAAACTCGGTCTTGTCTCACCTG
AAAGCATGGATAATTATTCACATTTCCACGAGCTGAGGGTCACGGAAGAGGAAATAAATGTGCTAAAGCA
GGATCTGCAGAATGCATTAGAAGAAAGTGAAAGAAATAAAGAGAAAGTGAGAGAGTTAGAGGAAAAACTG
GTAGAGAGGGAGAAAGGTACAGTGATTAAGCCACCTGTGGAAGAGTACGAGGAAATGAAAAGTTCATATT
GCTCTGTTATTGAGAATATGAATAAGGAGAAAGCATTTTTGTTTGAGAAATACCAAGAAGCCCAAGAAGA
AATCATGAAATTAAAAGACACACTAAAAAGTCAGATGACACAGGAAGCCAGTGATGAAGCTGAGGACATG
AAAGAAGCCATGAATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAG
AAGCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCA
TAAAGCAGAGCATGAGAAACTGATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCT
GAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGGATGCACAAA
AAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCAAAAGAGAT
GGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAA
CAACTCTTAGAAGAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGT
CATCCTTAGAGAGTGAAGTGAGTGTGTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGT
CCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAAAAGGAAAATATTCAGACT
CTCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTG
CAGAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGATAAATGAGAT
GTCGAAGGAAGTCACCAAATTGAAGGAGGCCTTGAACAGCCTCTCCCAGCTCTCCTACTCAACAAGCTCA
TCCAAAAGGCAGAGTCAGCAGCTGGAGGCGCTGCAGCAGCAAGTCAAACAGCTCCAGAACCAGCTGGCGG
AATGCAAGAAACAACACCAGGAGGTCATATCAGTTTACAGAATGCATCTTCTGTATGCTGTGCAGGGCCA
GATGGATGAAGATGTCCAGAAAGTACTGAAGCAAATCCTTACCATGTGTAAAAACCAGTCTCAAAAGAAG
TAA

Translation (980 aa):
MKSLKAKFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLR
VMITHGVDVTAQDTTGHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCE
HKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHGADVNSRNKSGRTALMLACEIGSSNAVEALIKKGAD
LNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSERSGTPKKRKAPPPPI
SPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLS
LLQAKVASLTLHNKELQDKLQAKSPKEAEADLSFDSYHSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSL
GKSTTDNDVRIQQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLSQKLKETQS
KYEEAMKEVLSVQKQMKLGLVSPESMDNYSHFHELRVTEEEINVLKQDLQNALEESERNKEKVRELEEKL
VEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDM
KEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALS
EMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLASKEVEVAKLEK
QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQT
LLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLSQLSYSTSS
SKRQSQQLEALQQQVKQLQNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILTMCKNQSQKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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