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Report for CCDS55018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55018.1 Public Homo sapiens 6 C6orf141 24 110 108 CCDS HistoryNCBI Gene:135398Re-query CCDS DB by CCDS ID:55018.1Re-query CCDS DB by GeneID:135398See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55018.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371194.7 ENSP00000431184.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371194.7Link to Ensembl Protein Viewer:ENSP00000431184.1Re-query CCDS DB by Nucleotide ID:ENST00000371194Re-query CCDS DB by Protein ID:ENSP00000431184
Original member Current member EBI ENST00000529246.4 ENSP00000434602.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000529246.4Link to Ensembl Protein Viewer:ENSP00000434602.2Re-query CCDS DB by Nucleotide ID:ENST00000529246Re-query CCDS DB by Protein ID:ENSP00000434602
Original member Current member EBI ENST00000414696.5 ENSP00000436754.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414696.5Link to Ensembl Protein Viewer:ENSP00000436754.1Re-query CCDS DB by Nucleotide ID:ENST00000414696Re-query CCDS DB by Protein ID:ENSP00000436754
Original member Current member NCBI NM_001145652.2 NP_001139124.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145652.2Link to Protein Sequence:NP_001139124.2Re-query CCDS DB by Nucleotide ID:NM_001145652Re-query CCDS DB by Protein ID:NP_001139124Link to BLAST:NP_001139124.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139124.2 244 Q5SZD1 244 100% 0 0

Chromosomal Locations for CCDS 55018.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49550793 49551527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGAATGACCCTTTTGCCAGGATGGAGACCCGGGGGCCTCAGGGAGCTGCGAATCCCATGGACTCCTCCC
GCAGCCTGGGGGACCTCGGGCCTTTTCCGCGGGAGGTAGGGCGCGGGGCTCCGCTAGCTCCGGGCGCCCG
GAATCCCGCGACGGCAGGGGCGAGCCGAAGCCAGGGCGGCGGCCACGAGGACAGAACGGCAGATCGGGCC
CTCGGACCTCGGGCCGGGGAGGAATTGGACCGTGAGTCCTGGGTCAGAGAGAAAGTGCTCTTTCTCCTGC
ACCCAGAGAGGTGGTTAGGGACTCGAGGGGACCCTGCACGGGAAGAGGTGGCCGGTGCAGAGGACCTTCC
TCATGCGGGTGGAGAGGACCACGGCGAGGAGCCCAACTACCCTTCTGTCTTTCAACGACAAAAGCGAATT
TCTGGCAGGCGTGTAGCCCCGCCGCGGGACGCAGCAGACCCACCCAAATACGTGCTTGTGCGGGTGGAGG
ATTATCAGGTAACACAAGAAGTGTTGCAGACCTCCTGGGCCAAGGGTCGCATGACCACGAGGACTGAGGA
GCACTTCGTGACCGCGCTCACTTTTCGCAGCAGTAGAGAGGGACAGCCTGGGGAACGCTGGGGCCCTGCT
GAATCCCGGGCTCTCCAGGCACGAACAGGGGCATCCCGCGTCCACGCCGCGGGGAGGAGGGTTTCACCGT
CTCCAGGGACTTGGCTCGAGGAAATTAAACTCTAA

Translation (244 aa):
MNDPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGHEDRTADRA
LGPRAGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAGAEDLPHAGGEDHGEEPNYPSVFQRQKRI
SGRRVAPPRDAADPPKYVLVRVEDYQVTQEVLQTSWAKGRMTTRTEEHFVTALTFRSSREGQPGERWGPA
ESRALQARTGASRVHAAGRRVSPSPGTWLEEIKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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