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Report for CCDS47583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47583.1 Public Homo sapiens 7 C7orf57 24 110 108 CCDS HistoryNCBI Gene:136288Re-query CCDS DB by CCDS ID:47583.1Re-query CCDS DB by GeneID:136288See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47583.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000348904.4 ENSP00000335500.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000348904.4Link to Ensembl Protein Viewer:ENSP00000335500.3Re-query CCDS DB by Nucleotide ID:ENST00000348904Re-query CCDS DB by Protein ID:ENSP00000335500
Original member Current member NCBI NM_001100159.3 NP_001093629.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100159.3Link to Protein Sequence:NP_001093629.1Re-query CCDS DB by Nucleotide ID:NM_001100159Re-query CCDS DB by Protein ID:NP_001093629Link to BLAST:NP_001093629.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093629.1 295 Q8NEG2-1 295 100% 0 0

Chromosomal Locations for CCDS 47583.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 48036309 48036363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48041334 48041519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48043481 48043589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48046460 48046616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48049880 48049977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48052700 48052923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48054595 48054606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48060226 48060272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGAGGAACACAAGCAAGGAACTTCAGGGCGCCACGCACCGCTACGCTCCCTGCGATTGGTATTACCACG
TCCCAGTGAAGCGCTCTGAGAAGGCCGTGGATGCCCCACCAGCGTCCCAGATCCCAGGTCTCAGCAATTT
GGGAGACTCACACAGCGAGAACCTGCCTGGGACTCGGAGATACTGGATAAAAGAAACAGATTCGGAATAT
GTGAAGCTCGCGAAACAAGGTGGCAGGCCCGATTTGTTGAAGCACTTTGCCCCTGGAACCAGGAAAGGCT
CTCCAGTGGCCTACTCCCTGCCAGACTGGTATATCCACCACAGCAAGCCACCGACAGCCAGCCAGCAAGA
AGTGCGGGCTGTCTCCATGCCGGATTACATGGTTCATGAAGAATTTAACCCCGATCAAGCCAATGGTAGC
TATGCATCCAGAAGAGGGCCCTTCGACTTCGACATGAAAACAGTTTGGCAAAGAGAGGCTGAGGAACTTG
AAAAGGAGAAAAAAAAGCTGAGGCTACCGGCCATTGACTCAAAGTATCTGAGCAAAGCAGGCACCCCACT
TGGCCCTAAGAATCCTGCAGGAAGTAGACTCTCCTTCCCCCCCGTGCCTGGTCAAAAAAACAGTTCACCT
ACCAATTTTTCCAAACTCATTAGCAATGGTTATAAGGATGAGTGGTTGCAGCAGCAGCAGCGAGCTGACT
CAGACAAGAGGACCCCGAAGACCTCCAGGGCATCAGTGTTATCTCAGTCCCCACGAGACCTGGAAGGTCC
CCAGGATGCAGCCAGGCTCCAGGATGCAGAGGCTTCTGAAGGTCCTGAGGACACCCCAGAGTCTTCTCAA
AGCCCAGAAGAATCTGTATCTGCATCAACACCAGCAGAGCTCAAATAA

Translation (295 aa):
MRNTSKELQGATHRYAPCDWYYHVPVKRSEKAVDAPPASQIPGLSNLGDSHSENLPGTRRYWIKETDSEY
VKLAKQGGRPDLLKHFAPGTRKGSPVAYSLPDWYIHHSKPPTASQQEVRAVSMPDYMVHEEFNPDQANGS
YASRRGPFDFDMKTVWQREAEELEKEKKKLRLPAIDSKYLSKAGTPLGPKNPAGSRLSFPPVPGQKNSSP
TNFSKLISNGYKDEWLQQQQRADSDKRTPKTSRASVLSQSPRDLEGPQDAARLQDAEASEGPEDTPESSQ
SPEESVSASTPAELK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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