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Report for CCDS43993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43993.1 Public Homo sapiens X RBMX2 24 110 108 CCDS HistoryNCBI Gene:51634Re-query CCDS DB by CCDS ID:43993.1Re-query CCDS DB by GeneID:51634See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43993.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305536.11 ENSP00000339090.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305536.11Link to Ensembl Protein Viewer:ENSP00000339090.4Re-query CCDS DB by Nucleotide ID:ENST00000305536Re-query CCDS DB by Protein ID:ENSP00000339090
Original member Current member NCBI NM_016024.4 NP_057108.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016024.4Link to Protein Sequence:NP_057108.2Re-query CCDS DB by Nucleotide ID:NM_016024Re-query CCDS DB by Protein ID:NP_057108Link to BLAST:NP_057108.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057108.2 322 Q9Y388 322 100% 0 0

Chromosomal Locations for CCDS 43993.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 130402033 130402037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130402255 130402370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130403802 130403853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130409257 130409386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130411348 130411525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130412361 130412848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGAACCCTTTAACTAAGGTGAAGCTGATCAACGAGCTGAATGAACGAGAGGTCCAGCTTGGGGTGGCCG
ATAAGGTGTCCTGGCACTCCGAGTACAAGGACAGCGCCTGGATCTTCCTGGGAGGGCTTCCTTATGAACT
GACTGAAGGGGACATCATCTGTGTGTTCTCACAATATGGGGAGATTGTTAACATTAATCTCGTGCGGGAC
AAGAAAACTGGGAAATCCAAAGGATTCTGTTTCCTCTGCTATGAAGACCAGAGGAGCACAATTCTGGCCG
TCGACAATTTTAATGGGATCAAGATCAAAGGAAGAACTATCCGAGTGGATCATGTGTCTAACTATCGGGC
TCCTAAGGACTCAGAAGAAATAGATGATGTGACCAGACAACTCCAGGAGAAGGGCTGTGGGGCTCGTACC
CCCTCACCAAGTTTGTCTGAGAGCTCTGAAGATGAAAAACCAACAAAAAAGCACAAAAAAGACAAAAAGG
AAAAAAAGAAAAAAAAGAAAGAAAAAGAGAAAGCCGACCGGGAGGTACAGGCAGAGCAACCATCCTCTTC
GTCACCCAGACGCAAGACAGTAAAGGAAAAGGATGACACTGGCCCTAAGAAGCACAGCAGCAAGAACTCA
GAGAGAGCTCAGAAGTCAGAGCCCAGGGAGGGGCAGAAGCTCCCCAAATCCAGGACGGCCTACTCTGGTG
GAGCAGAGGACCTAGAGAGGGAGCTGAAGAAGGAGAAACCCAAGCACGAGCACAAGTCCTCAAGCAGGAG
GGAGGCAAGAGAAGAAAAGACCAGGATTAGGGACAGAGGGCGGAGCTCAGATGCACATTCTAGCTGGTAT
AATGGGCGTTCTGAAGGGCGTAGTTATAGAAGTAGAAGTAGGAGCCGAGATAAATCCCATAGGCATAAAA
GGGCCCGACGCTCCCGGGAGCGGGAGTCTTCGAATCCCAGTGACCGTTGGCGTCACTGA

Translation (322 aa):
MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRD
KKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGART
PSPSLSESSEDEKPTKKHKKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNS
ERAQKSEPREGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAREEKTRIRDRGRSSDAHSSWY
NGRSEGRSYRSRSRSRDKSHRHKRARRSRERESSNPSDRWRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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