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Report for CCDS32312.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32312.2 Public Homo sapiens 15 C15orf40 24 110 108 CCDS HistoryNCBI Gene:123207Re-query CCDS DB by CCDS ID:32312.2Re-query CCDS DB by GeneID:123207See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 32312.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32312.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304177.10 ENSP00000307071.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304177.10Link to Ensembl Protein Viewer:ENSP00000307071.6Re-query CCDS DB by Nucleotide ID:ENST00000304177Re-query CCDS DB by Protein ID:ENSP00000307071
Original member Current member NCBI NM_144597.3 NP_653198.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144597.3Link to Protein Sequence:NP_653198.2Re-query CCDS DB by Nucleotide ID:NM_144597Re-query CCDS DB by Protein ID:NP_653198Link to BLAST:NP_653198.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653198.2 153 Q8WUR7-1 153 100% 0 0

Chromosomal Locations for CCDS 32312.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83005597 83005692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83008548 83008675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83010237 83010363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83011497 83011607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGCTGCGGCTCCGCAGCGGGCTGAGGCACCTTCGGGCAACACCCAATACTCGGGGCTCCGCTCGGCTTC
TTTGCGCCGAGATGCCTAAGAAGGCTGGTGCGACGACCAAGGGTAAAAGCCAGAGCAAGGAACCAGAGAG
ACCACTTCCTCCCTTAGGTCCTGTGGCAGTTGATCCTAAAGGATGCGTCACCATAGCCATCCATGCAAAA
CCTGGCTCCAAACAAAATGCTGTAACAGATTTGACAGCAGAGGCTGTAAATGTAGCTATTGCAGCACCTC
CATCAGAGGGAGAGGCTAATGCTGAGCTCTGTCGGTATCTTTCCAAGGTCCTAGAACTCAGGAAGAGTGA
TGTGGTTTTGGATAAGGGTGGTAAATCTCGTGAAAAGGTGGTGAAGCTTTTGGCTTCTACAACTCCAGAA
GAGATCTTGGAGAAATTAAAAAAGGAAGCCAAAAAAACATAA

Translation (153 aa):
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAK
PGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKGGKSREKVVKLLASTTPE
EILEKLKKEAKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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