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Report for CCDS55548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55548.1 Public Homo sapiens XY VAMP7 24 110 108 CCDS HistoryNCBI Gene:6845Re-query CCDS DB by CCDS ID:55548.1Re-query CCDS DB by GeneID:6845See the combined annotation on chromosome X in Sequence ViewerSee the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55548.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262640.11 ENSP00000262640.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262640.11Link to Ensembl Protein Viewer:ENSP00000262640.6Re-query CCDS DB by Nucleotide ID:ENST00000262640Re-query CCDS DB by Protein ID:ENSP00000262640
Original member Current member NCBI NM_001185183.2 NP_001172112.1 Accepted alive Link to Nucleotide Sequence:NM_001185183.2Link to Protein Sequence:NP_001172112.1Re-query CCDS DB by Nucleotide ID:NM_001185183Re-query CCDS DB by Protein ID:NP_001172112Link to BLAST:NP_001172112.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001172112.1 260 P51809-2 260 100% 0 0

Chromosomal Locations for CCDS 55548.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11) On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
X 155889467 155889612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155895623 155895680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155898112 155898249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155900497 155900587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155939701 155939793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155941883 155942139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

Chromosome Start Stop Links
Y 57075987 57076132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57082143 57082200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57084632 57084769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57087017 57087107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57126221 57126313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57128403 57128659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGCGATTCTTTTTGCTGTTGTTGCCAGGGGGACCACTATCCTTGCCAAACATGCTTGGTGTGGAGGAA
ACTTCCTGGAGGTGACAGAGCAGATTCTGGCTAAGATACCTTCTGAAAATAACAAACTAACGTACTCACA
TGGCAATTATTTGTTTCATTACATCTGCCAAGACAGGATTGTATATCTTTGTATCACTGATGATGATTTT
GAACGTTCCCGAGCCTTTAATTTTCTGAATGAGATAAAGAAGAGGTTCCAGACTACTTACGGTTCAAGAG
CACAGACAGCACTTCCATATGCCATGAATAGCGAGTTCTCAAGTGTCTTAGCTGCACAGCTGAAGCATCA
CTCTGAGAATAAGGGCCTAGACAAAGTGATGGAGACTCAAGCCCAAGTGGATGAACTGAAAGGAATCATG
GTCAGAAACATAGTCTGTCACCTTCAAAACTACCAGCAGAAATCTTGCTCGAGCCATGTGTATGAAGAAC
CTCAAGCTCACTATTATCATCATCATCGTATCAATTGTGTTCATCTATATCATTGTTTCACCTCTCTGTG
GTGGATTTACATGGCCAAGCTGTGTGAAGAAATAGGAAAGAAGAAGTTACCATTAACCAAGGATATGAGA
GAACAAGGAGTTAAAAGCAATCCATGTGACTCAAGCCTTTCACATACTGACAGATGGTATCTGCCAGTCT
CTTCAACCCTCTTCTCACTTTTTAAAATCTTGTTCCATGCCTCCAGGTTTATCTTTGTCTTATCTACCAG
TTTATTCCTGTGA

Translation (260 aa):
MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDF
ERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIM
VRNIVCHLQNYQQKSCSSHVYEEPQAHYYHHHRINCVHLYHCFTSLWWIYMAKLCEEIGKKKLPLTKDMR
EQGVKSNPCDSSLSHTDRWYLPVSSTLFSLFKILFHASRFIFVLSTSLFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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