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Report for CCDS45466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45466.1 Public Homo sapiens 16 HSD3B7 24 110 108 CCDS HistoryNCBI Gene:80270Re-query CCDS DB by CCDS ID:45466.1Re-query CCDS DB by GeneID:80270See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45466.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262520.10 ENSP00000262520.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262520.10Link to Ensembl Protein Viewer:ENSP00000262520.6Re-query CCDS DB by Nucleotide ID:ENST00000262520Re-query CCDS DB by Protein ID:ENSP00000262520
Original member Current member NCBI NM_001142777.2 NP_001136249.1 Accepted alive Link to Nucleotide Sequence:NM_001142777.2Link to Protein Sequence:NP_001136249.1Re-query CCDS DB by Nucleotide ID:NM_001142777Re-query CCDS DB by Protein ID:NP_001136249Link to BLAST:NP_001136249.1
Original member Current member NCBI NM_001142778.2 NP_001136250.1 Accepted alive Link to Nucleotide Sequence:NM_001142778.2Link to Protein Sequence:NP_001136250.1Re-query CCDS DB by Nucleotide ID:NM_001142778Re-query CCDS DB by Protein ID:NP_001136250Link to BLAST:NP_001136250.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136249.1 196 Q9H2F3-2 196 100% 0 0
NP_001136250.1 196 Q9H2F3-2 196 100% 0 0

Chromosomal Locations for CCDS 45466.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30985659 30985824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30986049 30986204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30986423 30986531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30986605 30986704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30987768 30987827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGCCGACTCTGCACAGGCCCAGAAGCTGGTGTACCTGGTCACAGGGGGCTGTGGCTTCCTGGGAGAGC
ACGTGGTGCGAATGCTGCTGCAGCGGGAGCCCCGGCTCGGGGAGCTGCGGGTCTTTGACCAACACCTGGG
TCCCTGGCTGGAGGAGCTGAAGACAGGGCCTGTGAGGGTGACTGCCATCCAGGGGGACGTGACCCAGGCC
CATGAGGTGGCAGCAGCTGTGGCCGGAGCCCATGTGGTCATCCACACGGCTGGGCTGGTAGACGTGTTTG
GCAGGGCCAGTCCCAAGACCATCCATGAGGTCAACGTGCAGGGTACCCGGAACGTGATCGAGGCTTGTGT
GCAGACCGGAACACGGTTCCTGGTCTACACCAGCAGCATGGAAGTTGTGGGGCCTAACACCAAAGGTCAC
CCCTTCTACAGGGGCAACGAAGACACCCCATACGAAGCAGTGCACAGGCACCCCTATCCTTGCAGCAAGG
CCCTGGCCGAGTGGCTGGTCCTGGAGGCCAACGGGAGGAAGGCAATGTTGCCTGGATGCACGTGCTGGCA
GCCCGGGAGCTGGAGCAGCGGGCAACCCTGA

Translation (196 aa):
MADSAQAQKLVYLVTGGCGFLGEHVVRMLLQREPRLGELRVFDQHLGPWLEELKTGPVRVTAIQGDVTQA
HEVAAAVAGAHVVIHTAGLVDVFGRASPKTIHEVNVQGTRNVIEACVQTGTRFLVYTSSMEVVGPNTKGH
PFYRGNEDTPYEAVHRHPYPCSKALAEWLVLEANGRKAMLPGCTCWQPGSWSSGQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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