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Report for CCDS33465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33465.1 Public Homo sapiens 20 TLDC2 24 110 108 CCDS HistoryNCBI Gene:140711Re-query CCDS DB by CCDS ID:33465.1Re-query CCDS DB by GeneID:140711See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33465.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217320.8 ENSP00000217320.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217320.8Link to Ensembl Protein Viewer:ENSP00000217320.3Re-query CCDS DB by Nucleotide ID:ENST00000217320Re-query CCDS DB by Protein ID:ENSP00000217320
Original member Current member EBI ENST00000602922.5 ENSP00000473323.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000602922.5Link to Ensembl Protein Viewer:ENSP00000473323.1Re-query CCDS DB by Nucleotide ID:ENST00000602922Re-query CCDS DB by Protein ID:ENSP00000473323
Original member Current member NCBI NM_080628.3 NP_542195.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080628.3Link to Protein Sequence:NP_542195.1Re-query CCDS DB by Nucleotide ID:NM_080628Re-query CCDS DB by Protein ID:NP_542195Link to BLAST:NP_542195.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542195.1 215 A0PJX2 215 100% 0 0

Chromosomal Locations for CCDS 33465.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36876175 36876207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36877899 36878054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36879041 36879193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36880655 36880750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36887455 36887528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36889251 36889386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGAGAGGCCTCCGCTGGCGTTACACTCGGCTGCCCAGCCAGGTGGAGGACACCCTGTCTGGGGAGGAGG
GTAACGAAGAGGAAGAGGAGGAGGAGGCAGCTCCAGACCCAGCTGCTGCTCCTGAGGATCCCACGGTGCC
CCAGCTGACAGAAGCCAGCCAGGTTTTGAGTGCCTCAGAGATTCGGCAGCTCAGCTTTCACTTCCCACCA
AGAGTCACCGGCCATCCCTGGAGTCTGGTCTTCTGCACGTCAAGGGACGGTTTCAGCCTGCAGAGCCTGT
ACCGGCGGATGGAGGGCTGCAGCGGGCCAGTGCTGCTGGTGCTCAGGGACCAGGACGGGCAGATATTTGG
AGCCTTCTCCTCCTCGGCTATCCGACTCAGCAAAGGCTTCTATGGTACTGGCGAGACATTCCTCTTCTCC
TTCTCCCCACAGCTGAAGGTCTTTAAGTGGACTGGAAGCAACTCTTTCTTTGTGAAGGGAGACTTGGATT
CACTGATGATGGGCAGTGGCAGTGGCCGGTTTGGGCTGTGGTTGGATGGAGACTTGTTCCGCGGGGGAAG
CTCCCCTTGCCCGACCTTCAACAACGAGGTGCTGGCCCGGCAGGAGCAGTTCTGCATCCAGGAGCTGGAG
GCTTGGCTTCTCAGCTGA

Translation (215 aa):
MRGLRWRYTRLPSQVEDTLSGEEGNEEEEEEEAAPDPAAAPEDPTVPQLTEASQVLSASEIRQLSFHFPP
RVTGHPWSLVFCTSRDGFSLQSLYRRMEGCSGPVLLVLRDQDGQIFGAFSSSAIRLSKGFYGTGETFLFS
FSPQLKVFKWTGSNSFFVKGDLDSLMMGSGSGRFGLWLDGDLFRGGSSPCPTFNNEVLARQEQFCIQELE
AWLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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