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Report for CCDS5467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5467.1 Public Homo sapiens 7 PSMA2 24 110 108 CCDS HistoryNCBI Gene:5683Re-query CCDS DB by CCDS ID:5467.1Re-query CCDS DB by GeneID:5683See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5467.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223321.9 ENSP00000223321.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000223321.9Link to Ensembl Protein Viewer:ENSP00000223321.4Re-query CCDS DB by Nucleotide ID:ENST00000223321Re-query CCDS DB by Protein ID:ENSP00000223321
Original member Current member EBI ENST00000442788.5 ENSP00000455744.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442788.5Link to Ensembl Protein Viewer:ENSP00000455744.1Re-query CCDS DB by Nucleotide ID:ENST00000442788Re-query CCDS DB by Protein ID:ENSP00000455744
Original member Current member EBI ENST00000676779.1 ENSP00000503278.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676779.1Link to Ensembl Protein Viewer:ENSP00000503278.1Re-query CCDS DB by Nucleotide ID:ENST00000676779Re-query CCDS DB by Protein ID:ENSP00000503278
Original member Current member EBI ENST00000677768.1 ENSP00000503930.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677768.1Link to Ensembl Protein Viewer:ENSP00000503930.1Re-query CCDS DB by Nucleotide ID:ENST00000677768Re-query CCDS DB by Protein ID:ENSP00000503930
Original member Current member NCBI NM_002787.5 NP_002778.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002787.5Link to Protein Sequence:NP_002778.1Re-query CCDS DB by Nucleotide ID:NM_002787Re-query CCDS DB by Protein ID:NP_002778Link to BLAST:NP_002778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002778.1 234 P25787 234 100% 0 0

Chromosomal Locations for CCDS 5467.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 42917574 42917690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42917778 42917835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42921858 42921931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42923325 42923406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42924675 42924797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42926536 42926668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42927383 42927459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42932118 42932158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGGCGGAGCGCGGGTACAGCTTTTCGCTGACTACATTCAGCCCGTCTGGTAAACTTGTCCAGATTGAAT
ATGCTTTGGCTGCTGTAGCTGGAGGAGCCCCGTCCGTGGGAATTAAAGCTGCAAATGGTGTGGTATTAGC
AACTGAGAAAAAACAGAAATCCATTCTGTATGATGAGCGAAGTGTACACAAAGTAGAACCAATTACCAAG
CATATAGGTTTGGTGTACAGTGGCATGGGCCCCGATTACAGAGTGCTTGTGCACAGAGCTCGAAAACTAG
CTCAACAATACTATCTTGTGTACCAAGAACCCATTCCTACAGCTCAGCTGGTACAGAGAGTAGCTTCTGT
GATGCAAGAATATACTCAGTCAGGTGGTGTTCGTCCATTTGGAGTTTCTTTACTTATTTGTGGTTGGAAT
GAGGGACGACCATATTTATTTCAGTCAGATCCATCTGGAGCTTACTTTGCCTGGAAAGCTACAGCAATGG
GAAAGAACTATGTGAATGGGAAGACTTTCCTTGAGAAAAGATATAATGAAGATCTGGAACTTGAAGATGC
CATTCATACAGCCATCTTAACCCTAAAGGAAAGCTTTGAAGGGCAAATGACAGAGGATAACATAGAAGTT
GGAATCTGCAATGAAGCTGGATTTAGGAGGCTTACTCCAACTGAAGTTAAGGATTACTTGGCTGCCATAG
CATAA

Translation (234 aa):
MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITK
HIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN
EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEV
GICNEAGFRRLTPTEVKDYLAAIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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