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Report for CCDS14066.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14066.2 Public Homo sapiens 22 RIBC2 24 110 108 CCDS HistoryNCBI Gene:26150Re-query CCDS DB by CCDS ID:14066.2Re-query CCDS DB by GeneID:26150See the combined annotation on chromosome 22 in Sequence Viewer

Public Note for CCDS 14066.1
This CCDS ID was withdrawn because the genome contains a deletion and cannot represent the correct protein. All the transcripts at this locus contain an insertion relative to the genome and therefore the transcripts and the genome represent different alleles.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14066.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614167.2 ENSP00000483356.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614167.2Link to Ensembl Protein Viewer:ENSP00000483356.1Re-query CCDS DB by Nucleotide ID:ENST00000614167Re-query CCDS DB by Protein ID:ENSP00000483356
Original member Current member NCBI NM_015653.5 NP_056468.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015653.5Link to Protein Sequence:NP_056468.3Re-query CCDS DB by Nucleotide ID:NM_015653Re-query CCDS DB by Protein ID:NP_056468Link to BLAST:NP_056468.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056468.3 382 Q9H4K1 382 100% 0 0

Chromosomal Locations for CCDS 14066.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 45413887 45414015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45414322 45414403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45417602 45417946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45422290 45422408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45425948 45426175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45430900 45431066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45432284 45432362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGGTTCCCAGACCATGGCGGTGGCGCTGCCCAGGGACTTGCGGCAGGACGCCAACCTGGCAAAGAGGA
GGCACGCGGAGCTGTGCAGGCAGAAGCGGGTCTTCAACGCCAGAAACAGGATAATTGGGGGAGACACTGA
AGCCTGGGATGTTCAAGTTCATGACCAGAAGATAAAAGAAGCTACTGAAAAAGCTAGACATGAAACCTTT
GCTGCTGAAATGAGGCAAAATGACAAAATCATGTGCATATTGGAAAACCGGAAAAAGAGGGATAGGAAAA
ATCTCTGTAGGGCTATCAATGACTTCCAACAGAGCTTTCAGAAGCCAGAAACTCGCCGTGAATTTGATCT
GTCCGACCCCCTAGCCCTTAAGAAAGATCTTCCAGCCCGGCAGTCAGATAATGATGTTCGGAATACGATA
TCAGGAATGCAGAAATTCATGGGAGAGGATTTAAACTTCCATGAGAGGAAGAAATTCCAAGAGGAACAAA
ACAGAGAATGGTCTTTGCAGCAGCAAAGGGAATGGAAGAACGCCCGTGCTGAACAAAAATGCGCAGAGGC
CCTCTACACAGAGACAAGGCTGCAGTTTGACGAGACAGCCAAGCACCTCCAGAAGCTGGAAAGCACCACC
AGAAAGGCAGTTTGTGCATCTGTGAAAGACTTCAACAAGAGCCAGGCCATCGAGTCAGTGGAAAGGAAAA
AGCAAGAGAAAAAGCAAGAACAAGAGGACAACTTGGCCGAGATCACCAACCTCCTGCGTGGGGACCTGCT
CTCCGAGAACCCGCAGCAGGCAGCCAGCTCCTTCGGGCCCCACCGCGTGGTCCCTGACCGCTGGAAGGGC
ATGACCCAGGAGCAGCTGGAGCAGATCCGCCTAGTCCAGAAGCAGCAAATCCAGGAGAAGCTGAGGCTCC
AGGAAGAAAAGCGCCAGCGAGACCTGGACTGGGACCGGCGGAGGATTCAGGGGGCTCGCGCCACCCTGCT
GTTTGAGCGGCAGCAGTGGCGGCGGCAGCGCGACCTGCGCAGAGCTCTGGACAGCAGCAACCTCAGCCTG
GCCAAGGAGCAGCATTTGCAGAAAAAATATATGAATGAAGTCTATACAAATCAACCCACGGGAGACTATT
TCACACAATTTAATACAGGAAGTCGATAA

Translation (382 aa):
MGSQTMAVALPRDLRQDANLAKRRHAELCRQKRVFNARNRIIGGDTEAWDVQVHDQKIKEATEKARHETF
AAEMRQNDKIMCILENRKKRDRKNLCRAINDFQQSFQKPETRREFDLSDPLALKKDLPARQSDNDVRNTI
SGMQKFMGEDLNFHERKKFQEEQNREWSLQQQREWKNARAEQKCAEALYTETRLQFDETAKHLQKLESTT
RKAVCASVKDFNKSQAIESVERKKQEKKQEQEDNLAEITNLLRGDLLSENPQQAASSFGPHRVVPDRWKG
MTQEQLEQIRLVQKQQIQEKLRLQEEKRQRDLDWDRRRIQGARATLLFERQQWRRQRDLRRALDSSNLSL
AKEQHLQKKYMNEVYTNQPTGDYFTQFNTGSR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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