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Report for CCDS8879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8879.1 Public Homo sapiens 12 ZNF385A 24 110 108 CCDS HistoryNCBI Gene:25946Re-query CCDS DB by CCDS ID:8879.1Re-query CCDS DB by GeneID:25946See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8879.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394313.7 ENSP00000377849.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394313.7Link to Ensembl Protein Viewer:ENSP00000377849.2Re-query CCDS DB by Nucleotide ID:ENST00000394313Re-query CCDS DB by Protein ID:ENSP00000377849
Original member Current member EBI ENST00000546970.5 ENSP00000446913.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546970.5Link to Ensembl Protein Viewer:ENSP00000446913.1Re-query CCDS DB by Nucleotide ID:ENST00000546970Re-query CCDS DB by Protein ID:ENSP00000446913
Original member Current member EBI ENST00000551109.5 ENSP00000449161.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000551109.5Link to Ensembl Protein Viewer:ENSP00000449161.1Re-query CCDS DB by Nucleotide ID:ENST00000551109Re-query CCDS DB by Protein ID:ENSP00000449161
Original member Current member NCBI NM_001290002.2 NP_001276931.1 Accepted alive Link to Nucleotide Sequence:NM_001290002.2Link to Protein Sequence:NP_001276931.1Re-query CCDS DB by Nucleotide ID:NM_001290002Re-query CCDS DB by Protein ID:NP_001276931Link to BLAST:NP_001276931.1
Original member Current member NCBI NM_001290004.2 NP_001276933.1 Accepted alive Link to Nucleotide Sequence:NM_001290004.2Link to Protein Sequence:NP_001276933.1Re-query CCDS DB by Nucleotide ID:NM_001290004Re-query CCDS DB by Protein ID:NP_001276933Link to BLAST:NP_001276933.1
Original member Current member NCBI NM_015481.3 NP_056296.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015481.3Link to Protein Sequence:NP_056296.1Re-query CCDS DB by Nucleotide ID:NM_015481Re-query CCDS DB by Protein ID:NP_056296Link to BLAST:NP_056296.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276931.1 366 Q96PM9-1 366 100% 0 0
NP_001276933.1 366 Q96PM9-1 366 100% 0 0
NP_056296.1 366 Q96PM9-1 366 100% 0 0

Chromosomal Locations for CCDS 8879.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54370256 54370486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54370626 54370721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54370927 54371096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54371473 54371715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54373973 54374135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54375844 54375954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54384428 54384514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGCAGCCCCCACTGGACCTCAAGCAGATCCTGCCCTTCCCACTCGAGCCAGCCCCTACCCTTGGCCTCT
TCAGCAACTACAGCACCATGGACCCTGTGCAGAAGGCTGTGCTCTCCCACACTTTTGGGGGACCCTTGCT
CAAGACCAAGCGGCCCGTCATTTCCTGTAATATCTGTCAAATCCGCTTCAATTCTCAGAGCCAGGCTGAG
GCGCACTACAAAGGTAATCGCCACGCCCGACGAGTCAAAGGCATTGAGGCTGCCAAGACCAGAGGCAGGG
AGCCTGGCGTCCGAGAACCTGGAGACCCAGCTCCCCCAGGCAGCACCCCAACAAATGGGGATGGTGTAGC
ACCCCGTCCAGTTTCCATGGAGAATGGACTGGGGCCAGCCCCAGGATCCCCAGAGAAACAGCCTGGCTCC
CCATCCCCTCCCAGCATTCCGGAGACTGGTCAGGGTGTAACCAAGGGTGAAGGGGGGACTCCAGCCCCGG
CTTCCTTGCCTGGGGGTAGCAAGGAAGAGGAGGAGAAAGCCAAGCGGCTGCTCTACTGTGCTCTGTGCAA
GGTGGCTGTGAACTCCCTGTCCCAGCTTGAGGCACATAACAAAGGTACTAAGCACAAGACAATTCTGGAG
GCCCGAAGTGGGCTCGGGCCCATCAAAGCTTACCCTCGGCTGGGGCCTCCCACCCCGGGGGAACCAGAGG
CTCCTGCCCAGGACCGAACTTTCCACTGTGAGATCTGCAATGTCAAGGTCAACTCGGAGGTCCAACTGAA
ACAGCACATCTCCAGCCGGCGGCACCGAGACGGCGTGGCCGGGAAGCCCAACCCACTACTGAGCCGTCAC
AAGAAGTCTAGGGGCGCCGGGGAGCTGGCGGGCACGCTGACTTTCTCCAAGGAGCTGCCCAAGTCCCTGG
CGGGCGGCCTGCTCCCCAGCCCCCTGGCGGTGGCTGCAGTGATGGCAGCGGCAGCAGGCTCGCCGCTGTC
CCTGCGCCCGGCTCCAGCCGCACCTCTTCTCCAGGGACCGCCGATCACTCACCCTCTGCTTCACCCGGCC
CCCGGACCCATCCGAACTGCGCACGGACCCATCCTCTTCTCCCCGTACTGA

Translation (366 aa):
MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQIRFNSQSQAE
AHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGS
PSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILE
ARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRH
KKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPA
PGPIRTAHGPILFSPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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