NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53968.1 Public Homo sapiens 15 C15orf40 24 110 108 CCDS HistoryNCBI Gene:123207Re-query CCDS DB by CCDS ID:53968.1Re-query CCDS DB by GeneID:123207See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53968.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538348.6 ENSP00000441077.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538348.6Link to Ensembl Protein Viewer:ENSP00000441077.2Re-query CCDS DB by Nucleotide ID:ENST00000538348Re-query CCDS DB by Protein ID:ENSP00000441077
Original member Current member NCBI NM_001160116.2 NP_001153588.1 Accepted alive Link to Nucleotide Sequence:NM_001160116.2Link to Protein Sequence:NP_001153588.1Re-query CCDS DB by Nucleotide ID:NM_001160116Re-query CCDS DB by Protein ID:NP_001153588Link to BLAST:NP_001153588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153588.1 149 Q8WUR7-2 149 100% 0 0

Chromosomal Locations for CCDS 53968.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82989074 82989157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83008548 83008675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83010237 83010363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83011497 83011607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGCTGCGGCTCCGCAGCGGGCTGAGGCACCTTCGGGCAACACCCAATACTCGGGGCTCCGCTCGGCTTC
TTTGCGCCGAGATGCCTAAGAAGGCTGGTGCGACGACCAAGGGTAAAAGCCAGAGCAAGGAACCAGAGAG
ACCACTTCCTCCCTTAGGTCCTGTGGCAGTTGATCCTAAAGGATGCGTCACCATAGCCATCCATGCAAAA
CCTGGCTCCAAACAAAATGCTGTAACAGATTTGACAGCAGAGGCTGTAAATGTAGCTATTGCAGCACCTC
CATCAGAGGGAGAGGCTAATGCTGAGCTCTGTCGGTATCTTTCCAAGGTCCTAGAACTCAGGAAGAGTGA
TGTGGTTTTGGATAAGCTCTGCTATTCCATTCCTCAACAATTGGAGGAGACTCAGGAGGGCGTTTCAGGT
ATTCCTGATACTCCTTGTCATTTTCTGTGA

Translation (149 aa):
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAK
PGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKLCYSIPQQLEETQEGVSG
IPDTPCHFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH