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Report for CCDS53877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53877.1 Public Homo sapiens 13 SCEL 24 110 108 CCDS HistoryNCBI Gene:8796Re-query CCDS DB by CCDS ID:53877.1Re-query CCDS DB by GeneID:8796See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53877.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535157.5 ENSP00000437895.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535157.5Link to Ensembl Protein Viewer:ENSP00000437895.1Re-query CCDS DB by Nucleotide ID:ENST00000535157Re-query CCDS DB by Protein ID:ENSP00000437895
Original member Current member NCBI NM_001160706.2 NP_001154178.1 Accepted alive Link to Nucleotide Sequence:NM_001160706.2Link to Protein Sequence:NP_001154178.1Re-query CCDS DB by Nucleotide ID:NM_001160706Re-query CCDS DB by Protein ID:NP_001154178Link to BLAST:NP_001154178.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154178.1 646 O95171-3 646 100% 0 0

Chromosomal Locations for CCDS 53877.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77555876 77555918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77556596 77556713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77559804 77559863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77563831 77563899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77567680 77567748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77568295 77568333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77569371 77569451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77589144 77589224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77591395 77591460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77593514 77593573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77597545 77597589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77599329 77599388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77599689 77599748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77602065 77602124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77602654 77602713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77603076 77603135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77608056 77608115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77609058 77609117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77610047 77610106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77612891 77612941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77613893 77613955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77617599 77617658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77617803 77617862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77618004 77618060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77627947 77628009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77634379 77634450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77637120 77637194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77640676 77640784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77642706 77642808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77644258 77644274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGTCCAATGTTACCTTGAGAAAAATGTCTCCCACAGGAAATGAGATGAAGAGCACCACTCAGGGAACCA
CACGGAAGCAGCAGGATTTTCACGAGGTGAACAAAAGAAGAACTTTCTTACAGGATAACAGTTGGATAAA
GAAACGCCCTGAAGAAGAAAAAGATGAAAATTACGGTAGGGTGGTGCTCAACCGACATAATTCCCATGAT
GCATTGGACAGGAAAGTAAATGAGAGAGATGTGCCAAAAGCTACAATTAGTCGGTACAGTTCTGATGACA
CTTTGGACAGGATCTCAGACAGAAATGATGCTGCTAAAACATATAAGGCCAATACCTTGGATAACCAACT
AACCAATAGGAGCATGTCCATGTTTAGATCACTGGAAGTAACAAAGTTGCAACCTGGCGGTTCATTGAAT
GCCAACACCTCCAACACCATAGCATCCACTTCTGCTACTACTCCTGTAAAGAAGAAGAGGGAACCAGGTG
TTCACCCTCCAATACCTCCAAAGCCCAGTTCTCCTGTTTCTTCTCCTAACCAGCTGAGACAGGATAATAG
GCAGATACATCCACCTAAACCAGGTGTATATACAGAAACCAACAGATCTGCTGAAAGAAATATAAGGAGT
CAGGATCTTGATAACATCGTCAAAGTGGCCACTTCACTTCAGAGAAGTGACAAAGGTGAAGAATTGGATA
ATCTCATCAAAATGAACAAAAGCTTGAATAGGAATCAAGGTCTTGATAGTCTCTTCAGAGCAAATCCAAA
GGTAGAAGAAAGAGAGAAAAGAGCCAAAAGCCTTGAAAGTCTCATCTATATGAGTACCCGGACAGATAAA
GATGGCAAAGGAATCCAAAGCCTTGGAAGTCCGATTAAAGTTAATCAAAGGACTGACAAAAATGAGAAAG
GAAGACAAAATCTCGAATCTGTTGCTAAAGTGAATGCCAGGATGAATAAAACGAGCAGAAGAAGTGAAGA
CCTTGATAATGCTACTGAAGTAAATCCCAAAGGACATGAAAATACCACTGGGGGCCAGAGCCTTGATAAT
CTCATCAAAGTGACCCCTGAAGTAAAGAGAAGTAACCAAGGTTCCAAAGACCTTAATAACTTCATCAAAG
TGTATCCAGGAACAGAAAAAAGTACTGAAGGGGGCCAAAGTCTCGACAGCCTCATTAAAGTGACTCCTGA
AAGAAACAGAACTAACCAAGGGAACCAAGACTTGGAAAATCTTATCAAAGTGATCCCTTCAGCAAACAAA
AGCAGTGAACAAGGTCTTGATGAACATATTAATGTCAGCCCCAAAGCTGTCAAAAACACTGATGGAAAAC
AAGATCTTGATAAACTCATCAAGGTGAATCCTGAAATTTTCACAAACAACCAAAGAAACCAAGATCTTGC
TAACCTCATCAAAGTAAATCCTGCAGTAATCAGAAACAATCAGAGCCAAGACTTGGACAATCTTATTAAA
GTGAAACCTTCAGCTCTTAGAAACACTAATCGAGACCAGAACCTGGAAAATTTAATTGAAGTAAATTCTC
ATGTGTCTGAAAACAAGAATGGAAGCTCTAACACTGGAGCCAAGCAGGCAGGACCACAGGATACTGTTGT
GTACACAAGGACATATGTGGAGAATAGTAAATCACCCAAGGATGGATATCAGGAGAATATCTCTGGAAAA
TACATACAAACTGTTTATTCAACTTCTGATAGGTCTGTCATTGAAAGAGATATGTGCACTTACTGCCGAA
AACCCTTGGGTGTAGAAACTAAAATGATTTTAGATGAATTACAAATTTGCTGCCATTCTACTTGCTTTAA
GTGTGAAATATGCAAGCAGCCTTTGGAAAATCTACAAGCGGGTGATAGTATTTGGATTTATAGACAGACA
ATACACTGTGAACCTTGCTACTCTAAAATTATGGCAAAGTGGATTCCATAA

Translation (646 aa):
MSNVTLRKMSPTGNEMKSTTQGTTRKQQDFHEVNKRRTFLQDNSWIKKRPEEEKDENYGRVVLNRHNSHD
ALDRKVNERDVPKATISRYSSDDTLDRISDRNDAAKTYKANTLDNQLTNRSMSMFRSLEVTKLQPGGSLN
ANTSNTIASTSATTPVKKKREPGVHPPIPPKPSSPVSSPNQLRQDNRQIHPPKPGVYTETNRSAERNIRS
QDLDNIVKVATSLQRSDKGEELDNLIKMNKSLNRNQGLDSLFRANPKVEEREKRAKSLESLIYMSTRTDK
DGKGIQSLGSPIKVNQRTDKNEKGRQNLESVAKVNARMNKTSRRSEDLDNATEVNPKGHENTTGGQSLDN
LIKVTPEVKRSNQGSKDLNNFIKVYPGTEKSTEGGQSLDSLIKVTPERNRTNQGNQDLENLIKVIPSANK
SSEQGLDEHINVSPKAVKNTDGKQDLDKLIKVNPEIFTNNQRNQDLANLIKVNPAVIRNNQSQDLDNLIK
VKPSALRNTNRDQNLENLIEVNSHVSENKNGSSNTGAKQAGPQDTVVYTRTYVENSKSPKDGYQENISGK
YIQTVYSTSDRSVIERDMCTYCRKPLGVETKMILDELQICCHSTCFKCEICKQPLENLQAGDSIWIYRQT
IHCEPCYSKIMAKWIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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