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Report for CCDS34117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34117.1 Public Homo sapiens 4 FAM149A 24 110 108 CCDS HistoryNCBI Gene:25854Re-query CCDS DB by CCDS ID:34117.1Re-query CCDS DB by GeneID:25854See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34117.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000227065.8 ENSP00000227065.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000227065.8Link to Ensembl Protein Viewer:ENSP00000227065.4Re-query CCDS DB by Nucleotide ID:ENST00000227065Re-query CCDS DB by Protein ID:ENSP00000227065
Original member Current member EBI ENST00000514153.5 ENSP00000424380.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514153.5Link to Ensembl Protein Viewer:ENSP00000424380.1Re-query CCDS DB by Nucleotide ID:ENST00000514153Re-query CCDS DB by Protein ID:ENSP00000424380
Original member Current member EBI ENST00000503432.5 ENSP00000426835.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503432.5Link to Ensembl Protein Viewer:ENSP00000426835.1Re-query CCDS DB by Nucleotide ID:ENST00000503432Re-query CCDS DB by Protein ID:ENSP00000426835
Original member Current member EBI ENST00000502970.5 ENSP00000427155.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502970.5Link to Ensembl Protein Viewer:ENSP00000427155.1Re-query CCDS DB by Nucleotide ID:ENST00000502970Re-query CCDS DB by Protein ID:ENSP00000427155
Original member Current member NCBI NM_001006655.3 NP_001006656.1 Accepted alive Link to Nucleotide Sequence:NM_001006655.3Link to Protein Sequence:NP_001006656.1Re-query CCDS DB by Nucleotide ID:NM_001006655Re-query CCDS DB by Protein ID:NP_001006656Link to BLAST:NP_001006656.1
Original member Current member NCBI NM_015398.4 NP_056213.1 Accepted alive Link to Nucleotide Sequence:NM_015398.4Link to Protein Sequence:NP_056213.1Re-query CCDS DB by Nucleotide ID:NM_015398Re-query CCDS DB by Protein ID:NP_056213Link to BLAST:NP_056213.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006656.1 482 A5PLN7-2 482 100% 0 0
NP_056213.1 482 A5PLN7-2 482 100% 0 0

Chromosomal Locations for CCDS 34117.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 186151960 186152045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 186153645 186153770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 186154468 186154638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 186156000 186156190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 186157565 186157719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 186162845 186162948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 186163424 186163633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 186165344 186165464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 186166968 186167096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 186167181 186167262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 186171914 186171987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGTTATTTGAAGGGAAAGTGAACCCTCAGACCCAGAGTCTGCTGGCCGAATGCGGGGAGTGGACAAGAA
GATCCCTCCATTTGAGAGTATTAGGAAGACAGCTGATCCTGCCCACTGACAAAGGCGTCCAGCATTTCCA
GGGCAGCACTCCTGCCTCCGCAGTCCACAGACCCCCGCTCAGTGCCTGCGGACACAGCAGCAACATCAGA
GAGTTGTGCATTTCTGGCTCTCAAATAGTCCCAGCAGCACTCTCAGCCTCTGCCCTGCCAGGCCCTGATG
ACACAGGGGTTGCTGACCTAACGGCACGTTCATCCCTGGAAGAAGAGGTTTACCATGTGGATGGAAAGAT
TGAGGAGTATTTCGCTTTTGACAGAAAAGAGGATGATGATGAATGTCTTGAACAAAAACCAGCTCAGCCC
GGTAGGAAATGGCGCAAACTCGGACTTCCTCCTGTTTCCCCGCGTGACTGTGTCAAAGATGCCGTGGCAG
CAGAAGTGTTTGATCACGTCTGGACAAATATGGTAGAACTTTTGGAAGAGCTGATTAGAAAACACTGGGA
AACTACACTCACAGAAGGGAAAAAACAGAGAGAAACATTGAAAGTGGCTGGAAACAGATTTCCGCACGTC
CTCGTTCCACACGCTCACGCCGATGGAGCCAGTGGCCCCCCGTCCGGACACGCCGAGGCTCACGGCATCT
CCCTGGCTTCTCGTCTGAACCCGCCCCAGATTCATCACTTCTCCAGCAGTTTTTATAGTGACATGAATGG
TGTCATGACAATTCAAGCAAAACCGCTTCAGCGGAGACCTGCCTATTTTGCTGACAGAACGCAGAATGAG
AAGGAGGACAAAGCATCGGGTGGAGGGGCAGGTGCTCTCTCCTCCGCACCGCACAGACTGGGACGGGCCT
CAGACACTCATGGATTATCACCTTCTGCAAAGAAAACACCAGTGCCCTGGAGGCTGCCTTCTCTTGCTTC
AGATTCACAGAGACTAAAAACTCCCAACATCTATAGTGACGAAGTTCTTCGGGGAACAAAACTGCCGACT
GGCGTGGACCACATGGCTTCCCCACTGGTTCAAACGTCACGGAGCAGGTTCCCCCCGCTAGTCACGGAGA
CCAGGGGGCAGAATACAGCAGTTCCTGGATGCCGCCTTGTTTCTTACAGAGGAAGGCATCTACAAAACCG
TGTGTTGAGTGCCATGCCTGACGGTACAGAACGATCGCGTCTTCGAGAAAGAACAGCCACCCTGGAACGG
TTGTCAAGGCCCAGCACAACCCACACGTTCCGGCAGTCGGATACGCCTCGAAAAAGTTCATTGACACAAA
TGGAATTTGCTGCTCACACATGGACAGGTCAAAGTATTTTGACAGGTTCACAATATGTGCCTAAATCTTT
TCAGAGGACAACTTTGACTTTCAAGAGGAGATTCCAAGTGACATCTTGA

Translation (482 aa):
MLFEGKVNPQTQSLLAECGEWTRRSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPLSACGHSSNIR
ELCISGSQIVPAALSASALPGPDDTGVADLTARSSLEEEVYHVDGKIEEYFAFDRKEDDDECLEQKPAQP
GRKWRKLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEELIRKHWETTLTEGKKQRETLKVAGNRFPHV
LVPHAHADGASGPPSGHAEAHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNE
KEDKASGGGAGALSSAPHRLGRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPT
GVDHMASPLVQTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTATLER
LSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILTGSQYVPKSFQRTTLTFKRRFQVTS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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