NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5399.1 Public Homo sapiens 7 SNX10 24 110 108 CCDS HistoryNCBI Gene:29887Re-query CCDS DB by CCDS ID:5399.1Re-query CCDS DB by GeneID:29887See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5399.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338523.9 ENSP00000343709.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338523.9Link to Ensembl Protein Viewer:ENSP00000343709.5Re-query CCDS DB by Nucleotide ID:ENST00000338523Re-query CCDS DB by Protein ID:ENSP00000343709
Original member Current member EBI ENST00000396376.5 ENSP00000379661.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396376.5Link to Ensembl Protein Viewer:ENSP00000379661.1Re-query CCDS DB by Nucleotide ID:ENST00000396376Re-query CCDS DB by Protein ID:ENSP00000379661
Original member Current member EBI ENST00000446848.6 ENSP00000395474.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446848.6Link to Ensembl Protein Viewer:ENSP00000395474.3Re-query CCDS DB by Nucleotide ID:ENST00000446848Re-query CCDS DB by Protein ID:ENSP00000395474
Original member Current member EBI ENST00000698078.1 ENSP00000513550.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698078.1Link to Ensembl Protein Viewer:ENSP00000513550.1Re-query CCDS DB by Nucleotide ID:ENST00000698078Re-query CCDS DB by Protein ID:ENSP00000513550
Original member Current member EBI ENST00000698079.1 ENSP00000513551.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698079.1Link to Ensembl Protein Viewer:ENSP00000513551.1Re-query CCDS DB by Nucleotide ID:ENST00000698079Re-query CCDS DB by Protein ID:ENSP00000513551
Original member Current member EBI ENST00000698080.1 ENSP00000513552.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698080.1Link to Ensembl Protein Viewer:ENSP00000513552.1Re-query CCDS DB by Nucleotide ID:ENST00000698080Re-query CCDS DB by Protein ID:ENSP00000513552
Original member Current member EBI ENST00000698088.1 ENSP00000513558.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698088.1Link to Ensembl Protein Viewer:ENSP00000513558.1Re-query CCDS DB by Nucleotide ID:ENST00000698088Re-query CCDS DB by Protein ID:ENSP00000513558
Original member Current member EBI ENST00000698090.1 ENSP00000513560.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698090.1Link to Ensembl Protein Viewer:ENSP00000513560.1Re-query CCDS DB by Nucleotide ID:ENST00000698090Re-query CCDS DB by Protein ID:ENSP00000513560
Original member Current member NCBI NM_001199835.1 NP_001186764.1 Accepted alive Link to Nucleotide Sequence:NM_001199835.1Link to Protein Sequence:NP_001186764.1Re-query CCDS DB by Nucleotide ID:NM_001199835Re-query CCDS DB by Protein ID:NP_001186764Link to BLAST:NP_001186764.1
Original member Current member NCBI NM_001318199.3 NP_001305128.1 Accepted alive Link to Nucleotide Sequence:NM_001318199.3Link to Protein Sequence:NP_001305128.1Re-query CCDS DB by Nucleotide ID:NM_001318199Re-query CCDS DB by Protein ID:NP_001305128Link to BLAST:NP_001305128.1
Original member Current member NCBI NM_013322.3 NP_037454.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013322.3Link to Protein Sequence:NP_037454.2Re-query CCDS DB by Nucleotide ID:NM_013322Re-query CCDS DB by Protein ID:NP_037454Link to BLAST:NP_037454.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186764.1 201 Q9Y5X0-1 201 100% 0 0
NP_001305128.1 201 Q9Y5X0-1 201 100% 0 0
NP_037454.2 201 Q9Y5X0-1 201 100% 0 0

Chromosomal Locations for CCDS 5399.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 26346443 26346466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26360975 26361061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26364535 26364635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26365047 26365145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26371821 26372033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26372491 26372572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGTTTCCGGAACAACAGAAAGAGGAATTTGTAAGTGTCTGGGTTCGAGATCCTAGGATTCAGAAGGAGG
ACTTCTGGCATTCTTACATTGACTATGAGATATGTATTCATACTAATAGCATGTGTTTTACAATGAAAAC
ATCCTGTGTACGAAGAAGATATAGAGAATTCGTGTGGCTGAGGCAGAGACTCCAAAGTAATGCGTTGCTG
GTACAACTGCCAGAACTTCCATCTAAAAACCTGTTTTTCAACATGAACAATCGCCAGCACGTGGATCAGC
GTCGCCAGGGTCTGGAAGATTTCCTCAGAAAAGTCCTACAGAATGCACTTTTGCTTTCAGATAGCAGCCT
TCACCTCTTCTTACAGAGCCATCTGAATTCAGAAGACATTGAGGCGTGTGTTTCTGGGCAGACTAAGTAC
TCTGTGGAAGAAGCAATTCACAAGTTTGCCTTAATGAATAGACGTTTCCCTGAAGAAGATGAAGAAGGAA
AAAAAGAAAATGATATAGATTATGATTCAGAAAGTTCATCCTCTGGGCTTGGACACAGTAGTGATGACAG
CAGTTCACATGGATGTAAAGTAAATACAGCTCCGCAGGAATCCTGA

Translation (201 aa):
MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALL
VQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKY
SVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH