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Report for CCDS42348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42348.1 Public Homo sapiens 17 ACBD4 24 110 108 CCDS HistoryNCBI Gene:79777Re-query CCDS DB by CCDS ID:42348.1Re-query CCDS DB by GeneID:79777See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42348.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321854.13 ENSP00000314440.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321854.13Link to Ensembl Protein Viewer:ENSP00000314440.8Re-query CCDS DB by Nucleotide ID:ENST00000321854Re-query CCDS DB by Protein ID:ENSP00000314440
Original member Current member EBI ENST00000398322.7 ENSP00000381367.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398322.7Link to Ensembl Protein Viewer:ENSP00000381367.2Re-query CCDS DB by Nucleotide ID:ENST00000398322Re-query CCDS DB by Protein ID:ENSP00000381367
Original member Current member NCBI NM_001135705.3 NP_001129177.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135705.3Link to Protein Sequence:NP_001129177.1Re-query CCDS DB by Nucleotide ID:NM_001135705Re-query CCDS DB by Protein ID:NP_001129177Link to BLAST:NP_001129177.1
Original member Current member NCBI NM_024722.4 NP_078998.1 Accepted alive Link to Nucleotide Sequence:NM_024722.4Link to Protein Sequence:NP_078998.1Re-query CCDS DB by Nucleotide ID:NM_024722Re-query CCDS DB by Protein ID:NP_078998Link to BLAST:NP_078998.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129177.1 305 Q8NC06-2 305 100% 0 0
NP_078998.1 305 Q8NC06-2 305 100% 0 0

Chromosomal Locations for CCDS 42348.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45136145 45136232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45136500 45136620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45136692 45136776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45137019 45137139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45137368 45137454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45137760 45137830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45137913 45137988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45139021 45139160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45143443 45143571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGGCACCGAGAAAGAAAGCCCAGAGCCCGACTGCCAGAAACAGTTCCAGGCTGCAGTGAGCGTCATCC
AGAACCTGCCCAAGAACGGTTCTTACCGCCCCTCCTATGAAGAGATGCTGCGATTCTACAGTTACTACAA
GCAGGCCACCATGGGGCCCTGCCTGGTCCCCCGGCCCGGGTTCTGGGACCCCATTGGACGATATAAGTGG
GACGCCTGGAACAGTCTGGGCAAGATGAGCAGGGAGGAGGCCATGTCTGCCTACATCACTGAAATGAAAC
TGGTGGCACAGAAGGTGATCGACACAGTGCCCCTGGGTGAGGTGGCAGAGGACATGTTTGGTTACTTCGA
GCCCCTGTACCAGGTGATCCCTGACATGCCGAGGCCCCCAGAGACCTTCCTGAGAAGGGTCACAGGTTGG
AAAGAGCAGGTTGTGAATGGAGATGTTGGGGCTGTTTCAGAGCCTCCCTGCCTCCCCAAGGAACCGGCAC
CCCCAAGCCCAGAGTCCCATTCACCCAGGGACCTGGACTCCGAGGTTTTCTGTGATTCCCTGGAGCAGCT
GGAGCCTGAGCTGGTTTGGACAGAGCAGCGGGCAGCATCTGGAGGAAAGCGTGATCCCAGGAACAGCCCC
GTGCCCCCCACAAAGAAAGAGGGGTTGCGGGGCAGCCCGCCGGGGCCCCAGGAGTTGGACGTGTGGCTGC
TGGGGACAGTTCGAGCACTACAGGAGAGCATGCAGGAGGTGCAGGCGAGGGTGCAGAGCCTGGAGAGCAT
GCCCCGGCCCCCTGAGCAGAGGCCGCAGCCCAGGCCCAGTGCTCGGCCATGGCCCCTTGGGCTCCCGGGG
CCCGCGCTGCTCTTCTTCCTCCTGTGGCCCTTCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAA
AGAGGTGA

Translation (305 aa):
MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKW
DAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLYQVIPDMPRPPETFLRRVTGW
KEQVVNGDVGAVSEPPCLPKEPAPPSPESHSPRDLDSEVFCDSLEQLEPELVWTEQRAASGGKRDPRNSP
VPPTKKEGLRGSPPGPQELDVWLLGTVRALQESMQEVQARVQSLESMPRPPEQRPQPRPSARPWPLGLPG
PALLFFLLWPFVVQWLFRMFRTQKR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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