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Report for CCDS31336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31336.1 Public Homo sapiens 11 MRPL23 24 110 108 CCDS HistoryNCBI Gene:6150Re-query CCDS DB by CCDS ID:31336.1Re-query CCDS DB by GeneID:6150See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381519.5 ENSP00000370930.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381519.5Link to Ensembl Protein Viewer:ENSP00000370930.1Re-query CCDS DB by Nucleotide ID:ENST00000381519Re-query CCDS DB by Protein ID:ENSP00000370930
Original member Current member EBI ENST00000397298.8 ENSP00000380466.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397298.8Link to Ensembl Protein Viewer:ENSP00000380466.3Re-query CCDS DB by Nucleotide ID:ENST00000397298Re-query CCDS DB by Protein ID:ENSP00000380466
Original member Current member NCBI NM_021134.4 NP_066957.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021134.4Link to Protein Sequence:NP_066957.3Re-query CCDS DB by Nucleotide ID:NM_021134Re-query CCDS DB by Protein ID:NP_066957Link to BLAST:NP_066957.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066957.3 153 Q16540 153 100% 0 0

Chromosomal Locations for CCDS 31336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 1947363 1947379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1950899 1951021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1952127 1952209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1952782 1952855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1956256 1956420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGCGCGGAATGTGGTGTACCCCCTGTACCGGCTGGGTGGCCCACAACTTCGGGTGTTCCGAACCAACT
TCTTCATTCAGCTGGTGCGGCCCGGTGTGGCCCAGCCCGAGGACACCGTGCAGTTCCGGATCCCCATGGA
AATGACAAGGGTGGACCTCAGGAATTACCTCGAGGGCATCTATAACGTGCCCGTGGCTGCTGTGCGGACA
CGGGTGCAGCATGGCTCTAACAAGAGAAGAGATCACAGAAACGTGAGGATCAAGAAGCCGGACTACAAGG
TCGCCTACGTGCAGCTGGCCCATGGACAGACCTTCACGTTCCCAGATCTGTTTCCCGAGAAAGACGAGAG
CCCTGAAGGCAGCGCTGCCGACGACCTCTACAGCATGCTCGAGGAGGAGAGGCAGCAGAGGCAGAGCAGC
GACCCGCGGCGGGGCGGCGTCCCCAGCTGGTTCGGGCTGTGA

Translation (153 aa):
MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRT
RVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAADDLYSMLEEERQQRQSS
DPRRGGVPSWFGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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