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Report for CCDS11187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11187.1 Public Homo sapiens 17 PEMT 24 110 108 CCDS HistoryNCBI Gene:10400Re-query CCDS DB by CCDS ID:11187.1Re-query CCDS DB by GeneID:10400See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11187.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395782.5 ENSP00000379128.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395782.5Link to Ensembl Protein Viewer:ENSP00000379128.1Re-query CCDS DB by Nucleotide ID:ENST00000395782Re-query CCDS DB by Protein ID:ENSP00000379128
Original member Current member EBI ENST00000395783.5 ENSP00000379129.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395783.5Link to Ensembl Protein Viewer:ENSP00000379129.1Re-query CCDS DB by Nucleotide ID:ENST00000395783Re-query CCDS DB by Protein ID:ENSP00000379129
Original member Current member NCBI NM_007169.3 NP_009100.2 Accepted alive Link to Nucleotide Sequence:NM_007169.3Link to Protein Sequence:NP_009100.2Re-query CCDS DB by Nucleotide ID:NM_007169Re-query CCDS DB by Protein ID:NP_009100Link to BLAST:NP_009100.2
Original member Current member NCBI NM_148173.2 NP_680478.1 Accepted alive Link to Nucleotide Sequence:NM_148173.2Link to Protein Sequence:NP_680478.1Re-query CCDS DB by Nucleotide ID:NM_148173Re-query CCDS DB by Protein ID:NP_680478Link to BLAST:NP_680478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009100.2 199 Q9UBM1-1 199 100% 0 0
NP_680478.1 199 Q9UBM1-1 199 100% 0 0

Chromosomal Locations for CCDS 11187.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 17505791 17505848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17506227 17506301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17509434 17509545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17512509 17512654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17522280 17522395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17576920 17577012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGACCCGGCTGCTGGGCTACGTGGACCCCCTGGATCCCAGCTTTGTGGCTGCCGTCATCACCATCACCT
TCAATCCGCTCTACTGGAATGTGGTTGCACGATGGGAACACAAGACCCGCAAGCTGAGCAGGGCCTTCGG
ATCCCCCTACCTGGCCTGCTACTCTCTAAGCGTCACCATCCTGCTCCTGAACTTCCTGCGCTCGCACTGC
TTCACGCAGGCCATGCTGAGCCAGCCCAGGATGGAGAGCCTGGACACCCCCGCGGCCTACAGCCTGGGCC
TCGCGCTCCTGGGACTGGGCGTCGTGCTCGTGCTCTCCAGCTTCTTTGCACTGGGGTTCGCTGGAACTTT
CCTAGGTGATTACTTCGGGATCCTCAAGGAGGCGAGAGTGACCGTGTTCCCCTTCAACATCCTGGACAAC
CCCATGTACTGGGGAAGCACAGCCAACTACCTGGGCTGGGCCATCATGCACGCCAGCCCCACGGGCCTGC
TCCTGACGGTGCTGGTGGCCCTCACCTACATAGTGGCTCTCCTATACGAAGAGCCCTTCACCGCTGAGAT
CTACCGGCAGAAAGCCTCCGGGTCCCACAAGAGGAGCTGA

Translation (199 aa):
MTRLLGYVDPLDPSFVAAVITITFNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHC
FTQAMLSQPRMESLDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDN
PMYWGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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