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Report for CCDS42702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42702.1 Public Homo sapiens 2 AUP1 24 110 108 CCDS HistoryNCBI Gene:550Re-query CCDS DB by CCDS ID:42702.1Re-query CCDS DB by GeneID:550See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42702.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377526.4 ENSP00000366748.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377526.4Link to Ensembl Protein Viewer:ENSP00000366748.3Re-query CCDS DB by Nucleotide ID:ENST00000377526Re-query CCDS DB by Protein ID:ENSP00000366748
Original member Current member NCBI NM_181575.5 NP_853553.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181575.5Link to Protein Sequence:NP_853553.1Re-query CCDS DB by Nucleotide ID:NM_181575Re-query CCDS DB by Protein ID:NP_853553Link to BLAST:NP_853553.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853553.1 410 Q9Y679-2 410 100% 0 0

Chromosomal Locations for CCDS 42702.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74526800 74526836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74526941 74527059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74527248 74527363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74527471 74527590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74527736 74527838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74527940 74528006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74528248 74528321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74528417 74528489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74528751 74528935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74529132 74529282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74529362 74529499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74529580 74529629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGGAGCTTCCCTCAGGGCCGGGGCCGGAGCGGCTCTTTGACTCGCACCGGCTTCCGGGTGACTGCTTCC
TACTGCTCGTGCTGCTGCTCTACGCGCCAGTCGGGTTCTGCCTCCTCGTCCTGCGCCTCTTTCTCGGGAT
CCACGTCTTCCTGGTCAGCTGCGCGCTGCCAGACAGCGTCCTTCGCAGATTCGTAGTGCGGACCATGTGT
GCGGTGCTAGGGCTCGTGGCCCGGCAGGAGGACTCCGGACTCCGGGATCACAGTGTCAGGGTCCTCATTT
CCAACCATGTGACACCTTTCGACCACAACATAGTCAATTTGCTTACCACCTGTAGCACCCCTCTACTCAA
TAGTCCCCCCAGCTTTGTGTGCTGGTCTCGGGGCTTCATGGAGATGAATGGGCGGGGGGAGTTGGTGGAG
TCACTCAAGAGATTCTGTGCTTCCACGAGGCTTCCCCCCACTCCTCTGCTGCTATTCCCTGAGGAAGAGG
CCACCAATGGCCGGGAGGGGCTCCTGCGCTTCAGTTCCTGGCCATTTTCTATCCAAGATGTGGTACAACC
TCTTACCCTGCAAGTTCAGAGACCCCTGGTCTCTGTGACGGTGTCAGATGCCTCCTGGGTCTCAGAACTG
CTGTGGTCACTTTTCGTCCCTTTCACGGTGTATCAAGTAAGGTGGCTTCGTCCTGTTCATCGCCAACTAG
GGGAAGCGAATGAGGAGTTTGCACTCCGTGTACAACAGCTGGTGGCCAAGGAATTGGGCCAGACAGGGAC
ACGGCTCACTCCAGCTGACAAAGCAGAGCACATGAAGCGACAAAGACACCCCAGATTGCGCCCCCAGTCA
GCCCAGTCTTCTTTCCCTCCCTCCCCTGGTCCTTCTCCTGATGTGCAACTGGCAACTCTGGCTCAGAGAG
TCAAGGAAGTTTTGCCCCATGTGCCATTGGGTGTCATCCAGAGAGACCTGGCCAAGACTGGCTGTGTAGA
CTTGACTATCACTAATCTGCTTGAGGGGGCCGTAGCTTTCATGCCTGAAGACATCACCAAGGGAACTCAG
TCCCTACCCACAGCCTCTGCCTCCAAGTTTCCCAGCTCTGGCCCGGTGACCCCTCAGCCAACAGCCCTAA
CATTTGCCAAGTCTTCCTGGGCCCGGCAGGAGAGCCTGCAGGAGCGCAAGCAAGCACTATATGAATACGC
AAGAAGGAGATTCACAGAGAGACGAGCCCAGGAGGCTGACTGA

Translation (410 aa):
MELPSGPGPERLFDSHRLPGDCFLLLVLLLYAPVGFCLLVLRLFLGIHVFLVSCALPDSVLRRFVVRTMC
AVLGLVARQEDSGLRDHSVRVLISNHVTPFDHNIVNLLTTCSTPLLNSPPSFVCWSRGFMEMNGRGELVE
SLKRFCASTRLPPTPLLLFPEEEATNGREGLLRFSSWPFSIQDVVQPLTLQVQRPLVSVTVSDASWVSEL
LWSLFVPFTVYQVRWLRPVHRQLGEANEEFALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQS
AQSSFPPSPGPSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLEGAVAFMPEDITKGTQ
SLPTASASKFPSSGPVTPQPTALTFAKSSWARQESLQERKQALYEYARRRFTERRAQEAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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