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Report for CCDS4712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4712.1 Public Homo sapiens 6 CSNK2B 24 110 108 CCDS HistoryNCBI Gene:1460Re-query CCDS DB by CCDS ID:4712.1Re-query CCDS DB by GeneID:1460See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4712.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375865.6 ENSP00000365025.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375865.6Link to Ensembl Protein Viewer:ENSP00000365025.2Re-query CCDS DB by Nucleotide ID:ENST00000375865Re-query CCDS DB by Protein ID:ENSP00000365025
Original member Current member EBI ENST00000375866.2 ENSP00000365026.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375866.2Link to Ensembl Protein Viewer:ENSP00000365026.2Re-query CCDS DB by Nucleotide ID:ENST00000375866Re-query CCDS DB by Protein ID:ENSP00000365026
Original member Current member EBI ENST00000375882.7 ENSP00000365042.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375882.7Link to Ensembl Protein Viewer:ENSP00000365042.3Re-query CCDS DB by Nucleotide ID:ENST00000375882Re-query CCDS DB by Protein ID:ENSP00000365042
Original member Current member NCBI NM_001320.7 NP_001311.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001320.7Link to Protein Sequence:NP_001311.3Re-query CCDS DB by Nucleotide ID:NM_001320Re-query CCDS DB by Protein ID:NP_001311Link to BLAST:NP_001311.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311.3 215 P67870 215 100% 0 0

Chromosomal Locations for CCDS 4712.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31666832 31666903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31667868 31667970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31668539 31668654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31669097 31669172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31669319 31669508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31669836 31669926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGAGCAGCTCAGAGGAGGTGTCCTGGATTTCCTGGTTCTGTGGGCTCCGTGGCAATGAATTCTTCTGTG
AAGTGGATGAAGACTACATCCAGGACAAATTTAATCTTACTGGACTCAATGAGCAGGTCCCTCACTATCG
ACAAGCTCTAGACATGATCTTGGACCTGGAGCCTGATGAAGAACTGGAAGACAACCCCAACCAGAGTGAC
CTGATTGAGCAGGCAGCCGAGATGCTTTATGGATTGATCCACGCCCGCTACATCCTTACCAACCGTGGCA
TCGCCCAGATGTTGGAAAAGTACCAGCAAGGAGACTTTGGTTACTGTCCTCGTGTGTACTGTGAGAACCA
GCCAATGCTTCCCATTGGCCTTTCAGACATCCCAGGTGAAGCCATGGTGAAGCTCTACTGCCCCAAGTGC
ATGGATGTGTACACACCCAAGTCATCAAGACACCATCACACGGATGGCGCCTACTTCGGCACTGGTTTCC
CTCACATGCTCTTCATGGTGCATCCCGAGTACCGGCCCAAGAGACCTGCCAACCAGTTTGTGCCCAGGCT
CTACGGTTTCAAGATCCATCCGATGGCCTACCAGCTGCAGCTCCAAGCCGCCAGCAACTTCAAGAGCCCA
GTCAAGACGATTCGCTGA

Translation (215 aa):
MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSD
LIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKC
MDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAASNFKSP
VKTIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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