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Report for CCDS55004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55004.1 Public Homo sapiens 6 TJAP1 24 110 108 CCDS HistoryNCBI Gene:93643Re-query CCDS DB by CCDS ID:55004.1Re-query CCDS DB by GeneID:93643See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55004.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372445.9 ENSP00000361522.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372445.9Link to Ensembl Protein Viewer:ENSP00000361522.5Re-query CCDS DB by Nucleotide ID:ENST00000372445Re-query CCDS DB by Protein ID:ENSP00000361522
Original member Current member EBI ENST00000372449.6 ENSP00000361527.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372449.6Link to Ensembl Protein Viewer:ENSP00000361527.1Re-query CCDS DB by Nucleotide ID:ENST00000372449Re-query CCDS DB by Protein ID:ENSP00000361527
Original member Current member EBI ENST00000438588.6 ENSP00000408769.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438588.6Link to Ensembl Protein Viewer:ENSP00000408769.2Re-query CCDS DB by Nucleotide ID:ENST00000438588Re-query CCDS DB by Protein ID:ENSP00000408769
Original member Current member NCBI NM_001146016.2 NP_001139488.1 Accepted alive Link to Nucleotide Sequence:NM_001146016.2Link to Protein Sequence:NP_001139488.1Re-query CCDS DB by Nucleotide ID:NM_001146016Re-query CCDS DB by Protein ID:NP_001139488Link to BLAST:NP_001139488.1
Original member Current member NCBI NM_001146017.2 NP_001139489.1 Accepted alive Link to Nucleotide Sequence:NM_001146017.2Link to Protein Sequence:NP_001139489.1Re-query CCDS DB by Nucleotide ID:NM_001146017Re-query CCDS DB by Protein ID:NP_001139489Link to BLAST:NP_001139489.1
Original member Current member NCBI NM_001350561.2 NP_001337490.1 Accepted alive Link to Nucleotide Sequence:NM_001350561.2Link to Protein Sequence:NP_001337490.1Re-query CCDS DB by Nucleotide ID:NM_001350561Re-query CCDS DB by Protein ID:NP_001337490Link to BLAST:NP_001337490.1
Original member Current member NCBI NM_001350562.2 NP_001337491.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001350562.2Link to Protein Sequence:NP_001337491.1Re-query CCDS DB by Nucleotide ID:NM_001350562Re-query CCDS DB by Protein ID:NP_001337491Link to BLAST:NP_001337491.1
Original member Current member NCBI NM_001350563.2 NP_001337492.1 Accepted alive Link to Nucleotide Sequence:NM_001350563.2Link to Protein Sequence:NP_001337492.1Re-query CCDS DB by Nucleotide ID:NM_001350563Re-query CCDS DB by Protein ID:NP_001337492Link to BLAST:NP_001337492.1
Original member Current member NCBI NM_001350564.2 NP_001337493.1 Accepted alive Link to Nucleotide Sequence:NM_001350564.2Link to Protein Sequence:NP_001337493.1Re-query CCDS DB by Nucleotide ID:NM_001350564Re-query CCDS DB by Protein ID:NP_001337493Link to BLAST:NP_001337493.1
Original member Current member NCBI NM_001350565.2 NP_001337494.1 Accepted alive Link to Nucleotide Sequence:NM_001350565.2Link to Protein Sequence:NP_001337494.1Re-query CCDS DB by Nucleotide ID:NM_001350565Re-query CCDS DB by Protein ID:NP_001337494Link to BLAST:NP_001337494.1
Original member Current member NCBI NM_001350566.2 NP_001337495.1 Accepted alive Link to Nucleotide Sequence:NM_001350566.2Link to Protein Sequence:NP_001337495.1Re-query CCDS DB by Nucleotide ID:NM_001350566Re-query CCDS DB by Protein ID:NP_001337495Link to BLAST:NP_001337495.1
Original member Current member NCBI NM_001350567.2 NP_001337496.1 Accepted alive Link to Nucleotide Sequence:NM_001350567.2Link to Protein Sequence:NP_001337496.1Re-query CCDS DB by Nucleotide ID:NM_001350567Re-query CCDS DB by Protein ID:NP_001337496Link to BLAST:NP_001337496.1
Original member Current member NCBI NM_001350568.2 NP_001337497.1 Accepted alive Link to Nucleotide Sequence:NM_001350568.2Link to Protein Sequence:NP_001337497.1Re-query CCDS DB by Nucleotide ID:NM_001350568Re-query CCDS DB by Protein ID:NP_001337497Link to BLAST:NP_001337497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139488.1 557 Q5JTD0-1 557 100% 0 0
NP_001139489.1 557 Q5JTD0-1 557 100% 0 0
NP_001337490.1 557 Q5JTD0-1 557 100% 0 0
NP_001337491.1 557 Q5JTD0-1 557 100% 0 0
NP_001337492.1 557 Q5JTD0-1 557 100% 0 0
NP_001337493.1 557 Q5JTD0-1 557 100% 0 0
NP_001337494.1 557 Q5JTD0-1 557 100% 0 0
NP_001337495.1 557 Q5JTD0-1 557 100% 0 0
NP_001337496.1 557 Q5JTD0-1 557 100% 0 0
NP_001337497.1 557 Q5JTD0-1 557 100% 0 0

Chromosomal Locations for CCDS 55004.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43499002 43499100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43500744 43500772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43501526 43501687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43502283 43502349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43502588 43502617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43503401 43503508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43503623 43503706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43504761 43505855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGACTAGTGCCGCCCCTGCTAAGAAACCCTACCGTAAGGCACCACCAGAGCATCGGGAGCTGCGTTTGG
AAATTCCTGGATCCCGGCTTGAGCAGGAGGAACCCCTGACTGATGCAGAAAGGATGAAGCTCTTACAGGA
GGAGAATGAAGAGCTTCGCCGGCGCCTGGCCTCCGCCACCAGACGCACTGAGGCCCTGGAACGTGAGCTG
GAAATTGGGCAGGACTGCCTGGAGCTGGAGCTGGGCCAGAGCCGCGAGGAGCTGGACAAATTTAAGGATA
AGTTCCGCAGGCTGCAGAACAGCTACACGGCTTCCCAGCGGACCAACCAGGAGTTGGAGGACAAGCTGCA
CACACTGGCCTCTCTTAGCCACAGCTGGATTTTTGCAATCAAGAAGGCTGAGATGGATAGGAAGACGCTG
GACTGGGAGATTGTGGAGCTGACCAACAAGCTGCTGGATGCCAAGAACACCATCAACAAGCTGGAAGAGC
TCAATGAGCGGTACCGGCTGGACTGCAACCTGGCTGTACAGCTCCTCAAGTGCAACAAGTCCCACTTCCG
AAACCACAAGTTTGCCGATCTGCCCTGTGAGCTACAGGACATGGTTCGGAAACATTTGCACAGTGGTCAA
GAGGCCGCCAGCCCAGGTCCTGCTCCCAGCCTAGCCCCAGGGGCTGTGGTGCCTACCTCAGTCATTGCCC
GAGTGTTAGAGAAGCCGGAGTCTCTACTGCTCAATTCAGCCCAGTCAGGCAGCGCCGGGCGCCCCTTGGC
TGAGGATGTCTTTGTGCATGTGGACATGAGTGAGGGTGTCCCAGGTGATCCAGCCAGTCCCCCGGCCCCT
GGCAGCCCCACCCCACAACCCAATGGGGAGTGCCACTCTCTGGGTACTGCCAGGGGCTCCCCGGAGGAAG
AGCTGCCCCTGCCAGCCTTTGAGAAGCTGAACCCCTACCCAACCCCGTCTCCACCACACCCACTGTATCC
TGGCCGCAGGGTAATAGAGTTCTCTGAGGATAAGGTTCGGATCCCCCGCAACAGCCCCCTGCCCAACTGC
ACTTACGCTACCCGCCAGGCCATTTCCCTGAGCCTGGTAGAGGAGGGGAGTGAGCGGGCCCGCCCCAGCC
CAGTGCCCAGCACCCCTGCCTCAGCCCAGGCCTCACCCCACCACCAGCCCAGCCCAGCACCCCTAACACT
CAGTGCCCCAGCTAGCTCTGCCAGCTCTGAAGAGGACCTGCTGGTCAGCTGGCAGCGGGCATTTGTGGAC
CGTACTCCACCACCTGCTGCTGTGGCCCAGCGCACAGCCTTTGGACGCGATGCCCTCCCTGAGCTGCAGC
GCCATTTTGCCCATAGCCCCGCTGACAGAGATGAGGTGGTCCAGGCACCTTCTGCCCGACCCGAAGAGAG
TGAGCTTTTGCTACCCACAGAACCTGACTCTGGCTTTCCCAGGGAGGAAGAAGAGCTGAACCTGCCTATC
AGTCCTGAGGAAGAGCGCCAGAGCCTGCTGCCCATTAACAGGGGCACAGAGGAGGGGCCAGGCACTTCCC
ACACCGAGGGCAGGGCCTGGCCACTCCCCAGCTCCAGTCGCCCCCAGCGCAGCCCCAAGAGGATGGGGGT
TCACCACCTGCACCGCAAGGACAGCCTGACCCAGGCCCAGGAGCAGGGCAACCTGCTCAACTAG

Translation (557 aa):
MTSAAPAKKPYRKAPPEHRELRLEIPGSRLEQEEPLTDAERMKLLQEENEELRRRLASATRRTEALEREL
EIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLASLSHSWIFAIKKAEMDRKTL
DWEIVELTNKLLDAKNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQDMVRKHLHSGQ
EAASPGPAPSLAPGAVVPTSVIARVLEKPESLLLNSAQSGSAGRPLAEDVFVHVDMSEGVPGDPASPPAP
GSPTPQPNGECHSLGTARGSPEEELPLPAFEKLNPYPTPSPPHPLYPGRRVIEFSEDKVRIPRNSPLPNC
TYATRQAISLSLVEEGSERARPSPVPSTPASAQASPHHQPSPAPLTLSAPASSASSEEDLLVSWQRAFVD
RTPPPAAVAQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLPTEPDSGFPREEEELNLPI
SPEEERQSLLPINRGTEEGPGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGNLLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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