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Report for CCDS1124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1124.1 Public Homo sapiens 1 RXFP4 24 110 108 CCDS HistoryNCBI Gene:339403Re-query CCDS DB by CCDS ID:1124.1Re-query CCDS DB by GeneID:339403See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1124.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368318.5 ENSP00000357301.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368318.5Link to Ensembl Protein Viewer:ENSP00000357301.4Re-query CCDS DB by Nucleotide ID:ENST00000368318Re-query CCDS DB by Protein ID:ENSP00000357301
Original member Current member NCBI NM_181885.3 NP_871001.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181885.3Link to Protein Sequence:NP_871001.1Re-query CCDS DB by Nucleotide ID:NM_181885Re-query CCDS DB by Protein ID:NP_871001Link to BLAST:NP_871001.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_871001.1 374 Q8TDU9 374 100% 0 0

Chromosomal Locations for CCDS 1124.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155941710 155942834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGCCCACACTCAATACTTCTGCCTCTCCACCCACATTCTTCTGGGCCAATGCCTCCGGAGGCAGTGTGC
TGAGTGCTGATGATGCTCCGATGCCTGTCAAATTCCTAGCCCTGAGGCTCATGGTTGCCCTGGCCTATGG
GCTTGTGGGGGCCATTGGCTTGCTGGGAAATTTGGCGGTGCTGTGGGTACTGAGTAACTGTGCCCGGAGA
GCCCCTGGCCCACCTTCAGACACCTTCGTCTTCAACCTGGCTCTGGCGGACCTGGGACTGGCACTCACTC
TCCCCTTTTGGGCAGCCGAGTCGGCACTGGACTTTCACTGGCCCTTCGGAGGTGCCCTCTGCAAGATGGT
TCTGACGGCCACTGTCCTCAACGTCTATGCCAGCATCTTCCTCATCACAGCGCTGAGCGTTGCTCGCTAC
TGGGTGGTGGCCATGGCTGCGGGGCCAGGCACCCACCTCTCACTCTTCTGGGCCCGAATAGCCACCCTGG
CAGTGTGGGCGGCGGCTGCCCTGGTGACGGTGCCCACAGCTGTCTTCGGGGTGGAGGGTGAGGTGTGTGG
TGTGCGCCTTTGCCTGCTGCGTTTCCCCAGCAGGTACTGGCTGGGGGCCTACCAGCTGCAGAGGGTGGTG
CTGGCTTTCATGGTGCCCTTGGGCGTCATCACCACCAGCTACCTGCTGCTGCTGGCCTTCCTGCAGCGGC
GGCAACGGCGGCGGCAGGACAGCAGGGTCGTGGCCCGCTCTGTCCGCATCCTGGTGGCTTCCTTCTTCCT
CTGCTGGTTTCCCAACCATGTGGTCACTCTCTGGGGTGTCCTGGTGAAGTTTGACCTGGTGCCCTGGAAC
AGTACTTTCTATACTATCCAGACGTATGTCTTCCCTGTCACTACTTGCTTGGCACACAGCAATAGCTGCC
TCAACCCTGTGCTGTACTGTCTCCTGAGGCGGGAGCCCCGGCAGGCTCTGGCAGGCACCTTCAGGGATCT
GCGGTTGAGGCTGTGGCCCCAGGGCGGAGGCTGGGTGCAACAGGTGGCCCTAAAGCAGGTAGGCAGGCGG
TGGGTCGCAAGCAACCCCCGGGAGAGCCGCCCTTCTACCCTGCTCACCAACCTGGACAGAGGGACACCCG
GGTGA

Translation (374 aa):
MPTLNTSASPPTFFWANASGGSVLSADDAPMPVKFLALRLMVALAYGLVGAIGLLGNLAVLWVLSNCARR
APGPPSDTFVFNLALADLGLALTLPFWAAESALDFHWPFGGALCKMVLTATVLNVYASIFLITALSVARY
WVVAMAAGPGTHLSLFWARIATLAVWAAAALVTVPTAVFGVEGEVCGVRLCLLRFPSRYWLGAYQLQRVV
LAFMVPLGVITTSYLLLLAFLQRRQRRRQDSRVVARSVRILVASFFLCWFPNHVVTLWGVLVKFDLVPWN
STFYTIQTYVFPVTTCLAHSNSCLNPVLYCLLRREPRQALAGTFRDLRLRLWPQGGGWVQQVALKQVGRR
WVASNPRESRPSTLLTNLDRGTPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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